Mathematical and Computational Evolutionary Biology Conference
La gorge du loup
June 21-25, 2015
Village de Porquerolles
Porquerolles (IGESA)
France
Download the program in PDF here : Program (PDF) (2245 Ko)
Sunday, June 21
19:30 Apéritif
20:00 Dinner
Monday, June 22
09:00 – 9:15 Welcome
09:15 – 10:30
KEYNOTE
A. HOBOLTH - Modelling DNA sequence evolution within and between species
10:30 – 11:00 Coffee break
11:00 – 12:20
4x 20 min TALKS (including questions)
G. ACHAZ - How models of population growth differ in the light of genetical data?
M. YE - A generative model for protein protein interaction network evolution based on modularity
V. LADRET - Evolutionary game dynamics in a finite continental-island model and emergence of cooperation
G. DALLA RIVA - Evolving in a tangled world
12:20 Lunch
14:00 – 15:00
3x 20 min TALKS (including questions)
C. SOLIS-LEMUS - Inferring phylogenetic networks from quartets with maximum pseudolikelihood estimation
P. GEMMELL - The evolutionary dynamics of endogenous retroviruses
E. DANCHIN - Evolutionary successful and asexual: the paradox of the root-knot nematodes?
15:00 – 15:15 Break
15:15 – 16:30
KEYNOTE
P. LEMEY - Data integrating in viral evolutionary inference: from spatial dynamics to trait evolution
16:30 – 18:30 Freetime, beach...
18:30 – 20:00
POSTERS
Wine and posters (1 to 10)
20:00 Dinner
Tuesday, June 23
09:15 – 10:30
KEYNOTE
J. CORANDER - ABC meets machine learning - fitting intractable models to genome data
10:30 – 11:00 Coffee break
11:00 – 12:15
KEYNOTE
B. MORET - Phylogenetic Transfer of Knowledge=> slides (PDF - 1,82 Mo)
12:15 Lunch
14:00 – 20:00 Free afternoon (beach, hiking, theorems, etc.)
20:00 Dinner
Wednesday, June 24
09:15 – 10:30
KEYNOTE
D. BRYANT - Recovering phylogeny and demographics from SNPs: prospects and limitations
10:30 – 11:00 Coffee break
11:00 – 12:20
4x 20 min TALKS (including questions)
M. PATTERSON - Correlated evolutionary scenarios of metabolic functions=> slides (PDF - 1,36 Mo)
F. POUYET - A new codon substitution model to better estimate evolutionary processes=> slides (PDF - 0,94 Mo)
F. ROUSSET - A calibrated method for simulation-based inference
P. ARNDT - How Evolution of Genomes Is Reflected in Exact DNA Sequence Match Statistics
12:20 Lunch
14:00 – 15:00
3x 20 min TALKS (including questions)
K. SCHEFFLER - RELAX: Detecting Relaxed Selection in a Phylogenetic Framework
M. SEMERIA - Probabilistic reconstruction of ancestral gene orders using reconciled gene trees
C. ILLINGWORTH - Evaluating the role of selection in the within-host evolution of the influenza virus
15:00 – 15:15 Break
15:15 – 16:30
KEYNOTE
K. ST. JOHN - Towards Improving the Search for Optimal Phylogenetic Trees=> slides (PDF - 10,33 Mo)
16:30 – 18:30 Freetime, beach...
18:30 – 20:00
POSTERS
Wine and posters (11 to 19)
20:00 dinner
Thursday, June 25
09:15 – 10:30
KEYNOTE
M. PRZEWORSKI - An evolutionary perspective on human germline mutation
10:30 – 11:00 Coffee break
11:00 – 12:15
KEYNOTE
L. ORLANDO - Ancient DNA: from very old molecules to genomes and epigenomes
12:15 Lunch and then farewell session
14:00 First ferry to « La Tour Fondue »
Proposed Posters
> Poster 1 : Using Genetic Algorithm for Optimizing Phylogenetic Tree Inference in Plant Species
ALKINDY Bassam (University Of Franche-Comte, FR)
> Poster 2 : Ancestral genome reconstruction with synteny helps to improve scaffolding of extant species.
ANSELMETTI YOANN (Institut Des Sciences De L'Évolution De Montpellier (ISE-M), FR)
> Poster 3 : Shifted stochastic processes evolving on trees: application to models of adaptive evolution on phylogenies
Bastide Paul (AgroParisTech - Université Paris Sud, FR)
> Poster 4 : Genome rearrangement with a dynamic intergene size distribution
Biller Priscila (University Of Campinas, BR)
> Poster 5 : Fast and accurate branch length estimation for phylogenomic trees.
BINET Manuel (LIRMM-ISEM-IBC, FR)
> Poster 6 : Evolution and diversity of alpha-satellite DNA in cercopithecines
Cacheux Lauriane (Muséum National D'Histoire Naturelle De Paris, FR)
> Poster 7 : On the Family-free Breakpoint Median of Three
Doerr Daniel (Laboratory For Computational Biology And Bioinformatics, School Of Computer And Communication Sciences, École Polytechnique Fédérale De Lausanne, CH)
> Poster 8 : Towards a high resolution understanding of the evolutionary forces shaping the population structure of common chimpanzees
Dordel Janina (Drexel University, US)
> Poster 9 : Reconstruction and comparison of an ancestral genome with an ancient genome of Yersinia pestis
Duchemin Wandrille (UMR CNRS 5558 - LBBE "Biométrie Et Biologie évolutive", FR)
> Poster 10 : Probabilistic approaches to estimate the mutation history of a tumor
Jahn Katharina (ETH Zurich, CH)
> Poster 11 : The contribution of genetic recombination to CRISPR array evolution
Kupczok Anne (University Of Kiel, DE)
> Poster 12 : Computing Models of Sequence Evolution in a Coalescent Context
Laurent Guéguen (LBBE - Université Lyon 1, FR)
> Poster 13 : A shark tale: population genomics of Carcharhinus melanopterus.
Maisano Delser Pierpaolo (Muséum National D'Histoire Naturelle, FR)
> Poster 14 : Resampling : an improvement of Importance Sampling in vaying population size models
Merle Coralie (Université De Montpellier, FR)
> Poster 15 : Importance of trait selection in estimating the viral contribution to virulence of an HIV infection
Mitov Venelin (ETH Zurich, CH)
> Poster 16 : A spatial scan statistic as a tool for uncovering heterozygosity clusters in highly inbred lines
Navas Amanda (Georg-August University, Goettingen, DE)
> Poster 17 : Phylodynamics framework for describing dengue epidemics in the French Polynesian
Salthouse David (CNRS, FR)
> Poster 18 : Bridging the gap between rooted and unrooted networks
Scholz Guillaume (University Of East Anglia, GB)
> Poster 19 : Comparing Genomes with Rearrangements and Segmental Duplications
Shao Mingfu (EPFL, CH)
> Poster 20 : Reconstructing cell lineage trees from single-cell sequencing data
Truszkowski Jakub (EBI Goldman Group And Cancer Research UK (S.Tavare), University Of Cambridge, )
NUMEV IBC CNRS Université de Montpellier
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