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International journal papers


G.Dérosiere, S. Dalhoumi, S. Perrey, G. Dray, T. Ward (2015)

Towards a Near Infrared Spectroscopy-Based Estimation of Operator Attentional State. PLOS ONE. March 2014 Vol 9 Issur 3 e92045



M Servajean, R Akbarinia, E Pacitti and S Amer-Yahia (2015)

"Profile Diversity for Query Processing using User Recommendations"

Information Systems, Elsevier,  35 pages.



E. Székely, A. Sallaberry, F. Zaidi, P. Poncelet (2015)

A Graph-based Method to Detect Rare Events: An Application to Identify Pathologic Cells. IEEE Computer Graphics and Applications



E. Kergosien, P. Maurel, M. Roche et M. Teisseire (2015)

Senterritoire pour la détection d’opinions liées à l’aménagement d’un territoire

Revue Internationale de Géomatique, 24 pages



Stoehr, J., Pudlo, P. & Cucala, L. (2015)

Adaptive ABC model choice and geometric summary statistics for hidden Gibbs random fields.

Statistics and Computing Volume 25, Issue 1, January, Page 129-141



O. V. Konevtsova, V. L. Lorman, S. B. Rochal (2015)

Structures of Spherical Viral Capsils as Quasicrytalline Tilings,

Physics of the Solid State, 2015, 57, No. 4, 810–814



J.-P. Bernard, E. Frenod, A. Rousseau (2015)

Discrete and Continuous Dynamical Systems

Series S, (AIMS), 2015, 8 (1), 45-54



M. Triki , T. Nguyen Ba and A. Vicet (2015)

Compact sensor for methane detection in the mid infrared region based on Quartz Enhanced Photoacoustic spectroscopy

Infrared Phys. Technol, 2015



T. Nguyen Ba, M. Triki, G. Desbrosses, and A. Vicet (2015)

Quartz-enhanced photoacoustic spectroscopy sensor for ethylene detection with a 3.32 µm DFB laser diode

Review of Scientific Instrum, 2015



E. Vas, A. Lescroel, O. Duriez, G. Boguszewski and D. Gremillet (2015)

"Approaching birds with drones: first experiments and ethical guidelines"

Biol. Lett. 11: 20140754.




H. Yi, W. Chen, A. Vicet, Z. Cao, X. Gao, T. Nguyen-ba, M. Jahjah, Y. Rouillard, L. Nahle, M. Fischer (2014)

" T-shape microresonator-based quartz-enhanced photoacoustic spectroscopy for ambient methane monitoring using 3.38 µm antimonide-distributed feedback laser diode"

Appl. Phys B Appl. Phys. B 116, pp 423-428, (2014)



M. Sanchez, O. Ecker, D. Ambard, F. Jourdan, F. Nicoud, S. Mendez, J.-P. Lejeune, L. Thines, H. Dufour, H. Brunel, P. Machi, K. Lobotesis, A. Bonafe, and V. Costalat  (2014)

Intracranial Aneurysmal Pulsatility as a New Individual Criterion for Rupture Risk Evaluation: Biomechanical and Numeric Approach (IRRAs Project), AJNR. American journal of neuroradiology, 2014 May 15



J. Buard, E. Rivals, D. Dunoyer de Segonzac, C. Garres, P. Caminade, B. de Massy, P. Boursot (2014)

Diversity of Prdm9 zinc Finger Array in Wild Mice Unravels New Facets of the Evolutionary Turnover of this Coding Minisatellite

PLoS One. 9(1):e85021.



J.-M. Cornuet, J. Veyssier, P. Pudlo, A. Dehne-Garcia, M. Gautier, R. Leblois, J.-M. Marin, A. Estoup (2014)

DIYABC v2.0: a software to make Approximate Bayesian Computation inferences about population history using Single Nucleotide Polymorphism, DNA sequence and microsatellite data, Bioinformatics, Jan 13 [Epub ahead of print]



C.C. Dang, V.S. Le, O. Gascuel, B. Hazes & Q.S. Le (2014)

FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets.

BMC bioinformatics, 15(1), 341.



E. Kergosien, B. Laval, M. Roche, M. Teisseire (2014)

Are opinions expressed in land-use planning documents?

International Journal of Geographical Information Science, vol. 28, issue 4, jan. 2014



M. A. Manna, P. Montalvo, R. A. Kraenkel (2014)

Finite time blow-up and breaking of solitary wind waves

PHYSICAL REVIEW E 90, 013006 (2014)



M. M. Afonso, S. Mendez, F. Nicoud (2014)

On the damped oscillations of an elastic quasi-circular membrane in a two-dimensions incompressible fluid

Journal of Fluid Mechanics (2014), vol. 746, pp. 300–331



S.Mendez, E.Gibaud,F.Nicoud (2014)

An unstructured solver for similations of deformable particles in flows at arbitrary Reynolds numbers

Journal of Computational Physics 256 (2014) 465–483



M. Tayachi Pigeonnat, A. Rousseau, E. Blayo, N. Goutal,V. Martin (2014)

Design and analysis of a Schwarz couplong method for a dimensionally heterogeneous problem

International Journal for Numerical Methods in Fluids, 2014, 75 (6), 446-465



L. Ciandrini, M. C. Romano, A. Parmeggiani (2014)

Stepping and Crowding of Molecular Motors : Statistical Kinetics from an Exclusion Process Perspective

Biophysical Journal 107 (2014) 1176–1184



L. Ciandrini, I. Neri, J.-C. Walter, O. Dauloudet, A. Parmeggiani (2014)

Motor protein traffic regulation by supply-demand balance of ressources

Physical  Biology 11 (2014) 056006 (17pp)



M. Dahesh, A. Banc, A. Duri, Morel H. and Ramos L. (2014)

«Polymeric Assembly of Gluten Proteins in an Aqueous Ethanol Solvent»

The Journal of Physical Chemistry, B, 2014, 118, 11065-11076



A. Stocco, G. Su, M. Nobili, M. In, D.Wang (2014)

In situ assessment of the contact angles of nanoparticles adsorbed at fluid interfaces by multiple angle of incidence ellipsometry

Soft matter, 2014, 10 (36), 6999-7007



G. Derosiere, N. Farrugia, S. Perrey, T. Ward , K Torre (In Press) (2014)

Expectations induced by natural-like temporal fluctuations are independent of attention decrement: Evidence from behavior and early visual evoked potentials

NeuroImage 104 (2015) 278-286



G. Derosiere, M. Billot, T. Ward, S. Perrey (2014)

Adaptations of the Motor Neural Structures' Activity to Lapses in Attention

 Cerebral Cortex, doi: 10.1093/cercor/bht206



O. Benzina, T. Cloitre, M. Martin, C.Raoul, C. Gergely, F. Scamps (2014)

Morphology and Intrinsic Excitability of Regenerating Sensory and Motor Neurons Grown on a Line Micropattern

PlosOne 9(10), 2014 doi:10.1371/journal.pone.0110687



L. Salmela, E. Rivals (2014)

LoRDEC: accurate and efficient long read error correction

Bioinformatics, doi:10.1093/bioinformatics/btu538, 30 (24): 3506-3514, 2014



Romain Blanc-Mathieu, Bram Verhelst, Evelyne Derelle, Stephane Rombauts, François-Yves Bouget, Isabelle Carré, Annie Chateau, Adam C Eyre-Walker, Nigel Grimsley, Herve Moreau, Benoit Piegu, Eric Rivals, Yves van de Peer, Wendy Schackwitz and Gwenael Piganeau (2014)

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

BMC Genomics, 15:1103 doi:10.1186/1471-2164-15-1103 2014



F. Chevenet, M. Jung, M. Peeters, T. De Oliveira, O. Gascuel (2013)

Searching for Virus Phylotypes

Bioinformatics, 29(5-2013):561-70



N. Philippe, M. Salson, T. Commes, E. Rivals (2013)

CRAC: an integrated approach to the analysis of RNA-seq reads

Genome Biology, 28;14(3):R30.



P. Montalvo, J. Dorignac, M.A. Manna, C. Kharif, H. Branger (2013)

Growth of surface wind-waves in water of finite depth. A theoretical approach.

Coastal Engineering 77 (2013) 49–56



P. Montalvo, R. Kraenkel, M. A. Manna, C. Kharif (2013)

Wind-wave amplification mechanisms : possible models for steep wave events in finite depth

Natural Hazards & Earth System Science Discussions, 1, 3099–3127, 2013



S. B. Rochal, V. L. Lorman, Yu. I. Yuzyuk (2013)

Two-dimensional elasticity determines the low-frequency dynamics of single- and double-walled carbon nanotubes

PHYSICAL REVIEW B 88, 235435 (2013)



O. Benzina, V. Szabo, O. Lucas, M-b. Saab, T. Cloitre, F. Scamps, C. Gergely and M. Martin (2013)

Changes induced by peripheral nerve injury in the morphology and nanomechanics of sensory neurons

Journal of Biomedical Optics 18(10), 106014 (2013)



A. Callan-Jones, O. E. Albarran Arriagada, G. Massiera, V. Lorman, M. Abkarian (2012)

Red Blood Cell Membrane Dynamics durind Malaria Parasite Egress

Biophysical Journal 103 (2012) 2475–2483



R.Longo, T.Delaunay, D.Laux, M El Mouridi, O.Arnould, E. Le Clezio (2012)

Wood elastic characterization from a single sample by resonant ultrasound spectroscopy

Ultrasonics 52 (2012) 971-974



International and national conferences


M Servajean, E Pacitti, M Liroz-Gistau, S Amer-Yahia and A El Abbadi (2015)

"Exploiting Diversification in Gossip-Based Recommendation" in Data Management in Cloud, Grid and P2P Systems (Globe), 12 pages,  München, Deutschland



S. Mendez, C. Chnafa, E. Gibaud, J. Sigüenza, V. Moureau and F. Nicoud (2015)

YALES2BIO : a Compitational Fluid Dynamics Software Delicated to the Prediction of Blood Flows in Biomedical Devices

IFMBE Proceedings 46 (2015)



V. L. Lorman, S. B. Rochal (2015)

Group Theory Methods in Virology: Landau Density Wave Approach

Springer Series Mathematics for Industry 2 (2015)



Manouk Abkarian et Annie Viallat (2015)

On the importance of red blood cells deformability in blood flow

chapitre d'ouvrage"Fluid-structure interactions at low Reynolds numbers"



B. Ropars, A. Lasbouygues, L. Lapierre and D. Andreu (2015)

Thruster's Dead-Zones Compensation for the actuation System of an Underwater Vehicle" ECC 2015, Conference, Linz, Austria, July 2015



A. Vicet,  Q. Gaimard, A. Larrue, L. Cerutti,  T. Nguyenba, M. Triki, Y. Rouillard, O Gauthier-Lafaye, R. Teissier, E. Tournie

New Index-Coupled Distributed-Feedback Gasb-Based Lasers Diodes In The 2 To 3µm Wavelength Range

Applications To Spectroscopy. MIRSENS 2015, 5-7 mars 2017 Frankfort



D. Alexandre, G. Lutfalla, M. Gross (2015)

Holographic imaging of Zebrafish embryo blood flow with dually oriented illumination beams. conférence: Digital Holography & 3-D Imaging

(DH) 24 - 28 May 2015. Shanghai Institute of Optics and Fine Mechanics, Shanghai, China



J. Stoehr (2014)

ABC model choice between hidden Gibbs random fields based on geometric summary statistics.

Fifth IMS-ISBA joint meeting MCMSki IV, Chamonix January 2014.



M. Servajean, E. Pacitti, M. Liroz-Gistau, A. Joly and J.Champ (2014)

"PlantRT: Multi-Site Diversified Search and Recommendation for Citizen Sciences"

in Journée Bases de Données Avancées (BDA), 5 pages, to appear, Grenoble, France, 2014



E. Kergosien, B. Laval, M. Roche, M. Teisseire (2014)

Opiland : identification de la perception des territoires par la fouille de texte

MASHS 2014 (special issue Fouille de Données et Humanités Numériques), vol. RNTI-SHS-2, pp.185-212, 2014



M. Servajean, E. Pacitti, M. Liroz Gistau, S. Amer-Yahia and A. El Abaddi (2014)

"Exploiting Diversification in Distributed Recommendation"

Journée Bases de Données Avancées (BDA), 15 pages, Grenoble, France, 2014



S. Bringay, E. Kergosien, P. Pompidor and P. Poncelet (2014)

Emotions target in health forums

Proceedings of CICLING'14 (Conference on Intelligent Text Processing and Computational Linguistics), Springer-Verlag, LNCS, Vol 2, Kathmandu, Nepal, 2014, p.85-97



E. Kergosien, C. Lopez, M. Roche and M. Teisseire (2014)

Looking for Opinion in Land-use Planning Corpora

Proceedings of CICLING'14 (Conference on Intelligent Text Processing and Computational Linguistics), Springer-Verlag, LNCS, Vol 2, Kathmandu, Nepal, 2014, p.128-140



Berrahou S.L., Lebras L., Buche P., Dibie-Barthélemy J., Roche M. (2014)

Enrichissement d’une RTO par l’ajout de termes spécialisés. Version révisée de l’atelier SOS-DLWD’13, Special Issue of RNTI, "Des Sources Ouvertes au Web de Données", In W 2014, vol. RNTI-W-2, pp.59-74



A. Rapaport, A. Rousseau, J. Harmand (2014)

Procédé de traitement d'une ressource fluide, programme d'ordinateur et module de traitement associés

France, Patent n° : FA 78 4546 - FR 13 55129. 2014



Parmeggiani, I. Neri, N. Kern (2014)

Modellong Collective Cytoskeletal Transport and Intracellular Traffic

The Impact of Applications on Mathematics, Springer Series Mathematics for Industry 1 (2014) 1-25



T. Nguyen Ba, Q. Gaimard, M. Triki, Y. Rouillard and A. Vicet (2014)

"quartz enhanced photoacoustic spectroscopy with antimonide compounds in very compact systems"

SPIE Photonic West 2014, San Francisco February 2014



Q. Gaimard, T. Nguyen-Ba, A. Larrue, L. Cerutti, Y. Rouillard, R. Teissier, A. Vicet. (2014)

"Distributed-feedback GaSb-based lasers diodes in the 2.3 to 3.3µm wavelength range"

SPIE Photonics Europe, April 2014



M. Triki, T. Nguyen Ba and A. Vicet (2014)

" Innovative sensor for gas detection in the near and mid infrared region based on Quartz Enhanced Photoacoustic spectroscopy"

FLAIR 2014 conference, Florence may 2014



A. Vicet, M. Triki, T. Nguyen Ba, Y. Rouillard, and Q. Gaimard (2014)

"High-sensitivity QEPAS  for environmental monitoring SPIE Photonics West, 1-6 janv 2014 (invite), Quantum sensing and Nanophotonics devices XI

Proceedings of SPIE, vol. 8993 (2014). ISBN: 9780819499066



Q. Gaimard, T. Nguyen Ba, A. Larrue, L. Cerutti, Y. Rouillard, R. Teissier and A. Vicet (2014)

Index coupled distributed feedback GaSb-based lasers diodes in the 2,3 to 3,3 µm wavelength range

Compound Semiconductor Week, 11-15 may Montpellier, France, 2014



T. Nguyen Ba, M. Triki and A. Vicet (2014)

Compact sensor for trace gas monitoring based on Quartz Enhanced Photoacoustic Spectroscopy   MIOMD XII 5-9 october 2014 Montpellier




Meriam Triki, T. Nguyen Ba et A. Vicet (2014)

Capteur innovant pour la détection de gaz dans la région proche et moyen infrarouge basé sur la technique de mesure par spectroscopie photoacoustique de quartz

PAMO-JSM, 7-10 juillet 2014, Reims



A. Lasbouygues, L. Lapierre, D. Andreu, J. Lopez Hermoso, H. Jourde, B. Ropars (2014)

"Stable and reactive centering in conduits for karstic exploration"

ECC 2014 conference, Strasbourg, June 2014



V.Muravyev, M. Bernard, L. Dusseau, C. Marco, A. Gaboriaud (2014)

“Investigation and Design of Cubesat Robusta-3 in Project Mediterrannee”

in proc. Small Satellite Services and Systems Symposium (ESA/CNES) 2014, 26-30 may 2014, Mallorca, Spain



N. Verrier, D. Alexandre, M. Gross (2014)

IMAGERIE MULTIMODALE DU ZEBRAFISH PAR HOLOGRAPHIE NUMERIQUE LASER DOPPLER Conference: 3ème rencontre francophone d’holographie numérique appliquée à la métrologie des fluides (Ecully, FR, 2014-11-13) publié sur HAL



N. Verrier, D. Alexandre, P. Picart, M. Gross (2014)

Fish embryo multimodal imaging by laser Doppler digital holography

Signal Recovery and Synthesis (Seattle,US, 2014-07-13) vol. OSA Technical Digest (online) 2014 p.paper JTu4A.7.



G. Brunel, P. Borianne, G. Subsol, M. Jaeger, Y. Caraglio (2013)

Defining reliability coefficients in an automated method of identification and characterization of radial files in microscopic images of gymnosperms
Proceedings of the 7th International Conference on Functional-Structural Plant Models, Saariselkä, Finland, 9 - 14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen & Pekka Nygren. ISBN 978-951-651-408-9.



G. Brunel, P. Borianne, G. Subsol, M. Jaeger (2013)

Simple-graphs fusion in image mosaic. Application to automated cell files identification in wood slices In Kämäräinen, J. K., Koskela, M. Eds, Image analysis : 18th Scandinavian Conference, SCIA 2013, Espoo, Finland, June 17-20. 34-43.



M. Baragatti & P. Pudlo (2014)

An overview on Approximate Bayesian computation

ESAIM: Proceedings, January, 2014, (Vol. 44, pp. 291-299). EDP Sciences.



M. Balduzzi, F. Boudon & C. Godin (2013)

Optimal 3D reconstruction of plants canopy from terrestrial laser scanner data by fusion of the 3D point information and the intensity value.

In 7th International Conference on Functional-Structural Plant Models ; Saariselkä, Finland ; R. Sievänen, E. N Ikinmaa, C. Godin, A. Lintunen, P. Nygren (editors), June 2013, pp. 58-60, ISBN 978-951-651-408-9.



M. Binet, O. Gascuel, C. Scornavacca, E. J.P. Douzery and F. Pardi (2013)

Distance-based phylogenomics

JOBIM 2013, Toulouse, Poster.



E. Kergosien, P. Maurel, M. Roche, M. Teisseire (2013)

OPITER : Fouille de données d’opinion pour les territoires, In Spatial Analysis and GEOmatics (Sagéo’13), Brest, 2013.



S. Tahrat, E. Kergosien, S. Bringay, M. Roche, and M. Teisseire (2013)

Text2Geo: from textual data to geospatial information

In the 3rd International Conference on Web Intelligence, Mining and Semantics (WIMS'13), 2013.



E. Székely, P. Poncelet, F. Masseglia, M. Teisseire and R. Cezar (2013)

"A density-based backward approach to isolate rare events in large-scale applications".

In Proceedings of the 16th International Conference on Discovery Science (DS 2013), Singapore, Republic of Singapore, October 2013. pp. 249-264.



M. Servajean, E. Pacitti, S. Amer-Yahia and P. Neveu (2013)

"Profile Diversity for Phenotyping Data Search and Recommendation"

in Journée Bases de Données Avancées (BDA), 20 pages, Nantes, France, 2013.



M. Servajean, E. Pacitti, S. Amer-Yahia and P. Neveu (2013)

"Profile Diversity in Search and Recommendation"

in Proceedings of the 22nd international conference on World Wide Web companion (WWW Companion), Rio de Janeiro, Brazil, 2013, pp 973-980.



S.L. Berrahou, P. Buche, J. Dibie-Barthélemy,  M. Roche (2013)

Units of measure identification in unstructured scientific documents

in microbial risk in food. In Proceedings of ICPMF 2013 (International Conference on Predictive Modelling in Food), Poster session, Paris, September 2013



A. Vicet, T. Nguyen Ba, Y. Rouillard, and Q. Gaimard (2013)

"Quartz enhanced photoacousic spectroscopy with new antimonide compounds"

TDLS, Conference Moscow, 17-21 june 2013 



A. Vicet, Y. Rouillard, L. Cerutti, R. Teissier, A. Baranov, M. Bahriz, E. Tournié (2013)

"Lasers antimoniures et application a la spectroscopie des gaz"

JNMO 2013, Evian, mai 2013



T.Nnguyen Ba, Q. Gaimard, A. Vicet (2013)

"Spectroscopie a quartz a base de diodes lasers antimoniure : application a la detection de methane et d’ethylene"

JNMO 2013, Evian, mai 2013



Q. Gaimard, T. Nguyen-Ba, Y. Rouillard, R. Teissier, A. Vicet (2013)

"Diodes laser antimoniures à puits quantiques mono-fréquences pour capteurs  de gaz nouvelle génération"

JNMO 2013, Evian, mai 2013



G. Derosière, M. Billot, S. Perrey, T. Ward (2013)

Adaptation of motor preparation to lapses in attention: a transcranial magnetic stimulation study. Communication affichée.

11ème Congrès des Neurosciences, 21 - 24 Mai 2013, Lyon - France.



G. Derosiere, S. Dalhoumi, M. Billot, S. Perrey, ET Ward, G. Dray  (2013)

Classification of NIRS-measured hemodynamics of the cerebral cortex to detect lapses in attention.

Proceedings of the 16th International Conference on Near-InfraRed Spectroscopy.



G. Derosière, M.Billot, T.E. Ward, S. Perrey & G. Dray (2012)

Investigating NIRS-measured cortical activation as a means to detect the occurrence of attention deficits during a task of sustained attention.

Communication affichée. 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, San Diego, August 28th – September 1st, 2012.