Bibliographie

Alizadeh et al., 2000

Alizadeh, A. A., Eisen, M. B., Davis, R. E., Ma, C., Lossos, I. S., Rosenwald, A., Boldrick, J. C., Sabet, H., Tran, T., Yu, X., Powell, J. I., Yang, L., Marti, G. E., Moore, T., Hudson, J. J., Lu, L., Lewis, D. B., Tibshirani, R., Sherlock, G., Chan, W. C., Greiner, T. C., Weisenburger, D. D., Armitage, J. O., Warnke, R., and Staudt, L. M. (2000).
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.
Nature, 403(6769):503-511.

Alon et al., 1999

Alon, U., Barkai, N., Notterman, D. A., Gish, K., Ybarra, S., Mack, D., and Levine, A. J. (1999).
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays.
Proc Natl Acad Sci USA, 96(12):6745-6750.

Ben-Dor et al., 2000

Ben-Dor, A., Bruhn, L., Friedman, N., Nachman, I., Schummer, M., and Yakhini, Z. (2000).
Tissue classification with gene expression profiles.
J Comput Biol, 7(3-4):559-583.

Ben-Dor et al., 2001

Ben-Dor, A., Friedman, N., and Yakhini, Z. (2001).
Class discovery in gene expression data.
In RECOMB, pages 31-38.

Ben-Dor et al., 1999

Ben-Dor, A., Shamir, R., and Yakhini, Z. (1999).
Clustering gene expression patterns.
J Comput Biol, 6(3-4):281-97.

Brown et al., 2000

Brown, M. P. S., Grundy, W. N., Lin, D., Cristianini, N., Sugnet, C., Furey, T. S., Manuel Ares, J., and Haussler, D. (2000).
Knowledge-based analysis of microarray gene expression data using support vector machines.
Proceedings of the National Academy of Sciences, 1:262-267.

Cho et al., 1998

Cho, R. J., Campbell, M. J., Winzeler, E. A., Steinmetz, L., Conway, A., Wodicka, L., Wolfsberg, T. G., Gabrielian, A. E., Landsman, D., Lockhart, D. J., and Davis, R. W. (1998).
A genome-wide transcriptional analysis of the mitotic cell cycle.
Mol Cell, 2(1):65-73.

Dudoit et al., 2002

Dudoit, S., Fridlyand, J., and Speed, T. P. (2002).
Comparison of discrimination methods for the classification of tumors using gene expression data.
Journal of the American Statistical Association, 97(457):77-??

Eisen et al., 1998

Eisen, M. B., Spellman, P. T., Brown, P. O., and Botstein, D. (1998).
Cluster analysis and display of genome-wide expression patterns.
Proc Natl Acad Sci U S A, 95(25):14863-14868.

Golub et al., 1999

Golub, T. R., Slonim, D. K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J. P., Coller, H., Loh, M. L., Downing, J. R., Caligiuri, M. A., Bloomfield, C. D., and Lander, E. S. (1999).
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.
Science, 286(5439):531-537.

Herwig et al., 1999

Herwig, R., Poustka, A. J., Muller, C., Bull, C., Lehrach, H., and O'Brien, J. (1999).
Large-scale clustering of cDNA-fingerprinting data.
Genome Res, 9(11):1093-105.

Jelinsky et al., 2000

Jelinsky, S. A., Estep, P., Church, G. M., and Samson, L. D. (2000).
Regulatory networks revealed by transcriptional profiling of damaged saccharomyces cerevisiae cells: Rpn4 links base excision repair with proteasomes.
Mol Cell Biol, 20(21):8157-8167.

Kohonen, 1997

Kohonen, T. (1997).
Self-Organizing Maps.
Springer.

Ross et al., 2000

Ross, D. T., Scherf, U., Eisen, M. B., Perou, C. M., Rees, C., Spellman, P., Iyer, V., Jeffrey, S. S., de Rijn, M. V., Waltham, M., Pergamenschikov, A., Lee, J. C., Lashkari, D., Shalon, D., Myers, T. G., Weinstein, J. N., Botstein, D., and Brown, P. O. (2000).
Systematic variation in gene expression patterns in human cancer cell lines.
Nat Genet, 24(3):227-235.

Sharan et al., 2002

Sharan, R., Elkon, R., and Shamir, R. (2002).
Cluster analysis and its applications to gene expression data.
Ernst Schering Res Found Workshop, 2(38):83-108.

Sharan and Shamir, 2000

Sharan, R. and Shamir, R. (2000).
Click: a clustering algorithm with applications to gene expression analysis.
In Proc Int Conf Intell Syst Mol Biol, pages 307-16.

Shipp et al., 2002

Shipp, M. A., Ross, K. N., Tamayo, P., Weng, A. P., Kutok, J. L., Aguiar, R. C. T., Gaasenbeek, M., Angelo, M., Reich, M., Pinkus, G. S., Ray, T. S., Koval, M. A., Last, K. W., Norton, A., Lister, T. A., Mesirov, J., Neuberg, D. S., Lander, E. S., Aster, J. C., and Golub, T. R. (2002).
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning.
Nat Med, 8(1):68-74.

Spellman et al., 1998

Spellman, P. T., Sherlock, G., Zhang, M. Q., Iyer, V. R., Anders, K., Eisen, M. B., Brown, P. O., Botstein, D., and Futcher, B. (1998).
Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization.
Mol Biol Cell, 9(12):3273-3297.

Tamayo et al., 1999

Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E. S., and Golub, T. R. (1999).
Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation.
Proc Natl Acad Sci U S A, 96(6):2907-2912.

van 't Veer et al., 2002

van 't Veer, L. J., Dai, H., van de Vijver, M. J., He, Y. D., Hart, A. A. M., Mao, M., Peterse, H. L., van der Kooy, K., Marton, M. J., Witteveen, A. T., Schreiber, G. J., Kerkhoven, R. M., Roberts, C., Linsley, P. S., Bernards, R., and Friend, S. H. (2002).
Gene expression profiling predicts clinical outcome of breast cancer.
Nature, 415(6871):530-536.