>YMR128W ECM16 SGDID:S000004735, Chr XIII from 523695-527498,
           Verified ORF, "Essential DEAH-box ATP-dependent RNA
           helicase specific to the U3 snoRNP, predominantly
           nucleolar in distribution, required for 18S rRNA
           synthesis"
          Length = 1267

 Score =  174 bits (441), Expect = 6e-47
 Identities = 113/293 (38%), Positives = 163/293 (55%), Gaps = 16/293 (5%)

Query: 436 RKVCYKNVQVNRKEHIDKVRASLPVLDYEQELIEAVLNYDVVFVNGDTGCGKSTQVPQFL 495
           RK  Y  V+V+R + I K R  LPV   E +++EA+ + DVV + G+TG GK+TQVPQFL
Sbjct: 371 RKAFY--VEVSRSDEIQKARIQLPVFGEEHKIMEAIHHNDVVIICGETGSGKTTQVPQFL 428

Query: 496 YEYGFTSNDY-----FIGITQPRKIAVKSICNRLNDELNE--EICGYQIRFEKSYFLKHS 548
           YE GF + D       +GITQPR++A  S+  R+ +EL +     GYQIRF+ S   + +
Sbjct: 429 YEAGFGAEDSPDYPGMVGITQPRRVAAVSMAERVANELGDHGHKVGYQIRFD-STAKEDT 487

Query: 549 KIKVMTEGILLKEIMSDFILSKYSVIILDEAHERXXXXXXXXXXXXXXXXXRNDNYYNFK 608
           K+K MT+G+LL+E+M DF L+KYS II+DEAHER                 R   +    
Sbjct: 488 KVKFMTDGVLLREMMHDFKLTKYSSIIIDEAHERNINTDILIGMLSRCVRLRAKLHKENP 547

Query: 609 SDXXXXXXXXMSATINDNNLFQNKIFQNFT--TVNIPTQKVQVIDHFLSYTPKDYVEEAK 666
            +        MSAT+  ++  +NK         + +  ++  V  HF   T  +Y +EA 
Sbjct: 548 IEHKKLKLIIMSATLRVSDFSENKTLFPIAPPVLQVDARQFPVSIHFNRRTAFNYTDEAF 607

Query: 667 RKIIQIHKKLPQGSILVFLTSQEEIYRLYNMLSN---LKITNSEFNQQGENKI 716
           RK  +IH+KLP G+ILVFLT Q+EI  +   L      K  NS++N+  E  +
Sbjct: 608 RKTCKIHQKLPPGAILVFLTGQQEITHMVKRLRKEFPFK-KNSKYNKDLETPV 659

 Score =  114 bits (284), Expect = 9e-29
 Identities = 74/239 (30%), Positives = 108/239 (45%), Gaps = 17/239 (7%)

Query: 821  KESDIKESDIKESDNDV-YDKELXXXXXXXXEPKKSNINTYELNNNTKKKSSIWKGSDGS 879
            K +D++  DI  S   +  DK          E    N    E       +  + +G   +
Sbjct: 667  KTTDLEAEDIDFSVQVIDQDKFKSAIRYEEDEGNSGNGEDEEDEEEEGFEEVLTEGQTAN 726

Query: 880  GTLKVFKLYSKLPMKDQMELFHNPKENERVCILSTNIAETSLTLPNIRYVIDCGKEKRKI 939
              L V  LYS LP K+QM +F  P +  R+CI++TN+AETSLT+P +RYV+D G+ K + 
Sbjct: 727  DPLYVLPLYSLLPTKEQMRVFQKPPQGSRLCIVATNVAETSLTIPGVRYVVDSGRSKERK 786

Query: 940  YSNLNDYSYYIIDNISKCSAIQRKGRAGRILYLLXXXXXXXXXXXXXXGHVXXXXXXXXX 999
            Y+  N    + +  +SK SA QR GRAGR                   GH          
Sbjct: 787  YNESNGVQSFEVGWVSKASANQRSGRAGR----------------TGPGHCYRLYSSAVF 830

Query: 1000 XXXXXXXXXXPILNYPLDSLILYLLSFNIKNVENFPFINKPDKSKFIEAKKRLIYLNCI 1058
                       IL  P++S++L + S  I N+ NFPF   PD+    +A + L YL  +
Sbjct: 831  EHDFEQFSKPEILRMPVESIVLQMKSMAIHNIINFPFPTPPDRVALSKAIQLLQYLGAL 889

 Score = 42.7 bits (99), Expect = 3e-07
 Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 21/183 (11%)

Query: 1253 NDILFYLNICTKF-YFSKDRNETCQIMH-LDKKKMNELLKLSNHLIKIINYKLNT---NI 1307
            +D+   L++ +   Y  K++ E     + L  K M E++KL   L+ II  K NT   NI
Sbjct: 1001 SDVFRLLSVVSAMDYVPKEQKEIFMKKNFLRGKLMEEIVKLRKQLMYII--KSNTSKENI 1058

Query: 1308 SLDMLQENISDISKNIIHYAVIQ-----GFIDHLAIRSDLVHNQYTRNQNITYNSKKAYI 1362
            ++ +  E++     ++I   +++     GF+DH+A+R+D++     +  N T      YI
Sbjct: 1059 AVVIRNEDLKSDIPSVIQIKLLKQMICAGFVDHVAVRADVLFPDDAKITNRTSIINIPYI 1118

Query: 1363 ----TQNMNMP---IYINSSSVLYQ-NRPYPKYILYNYITKNRNSYVMFDCL-KIDDAEL 1413
                T+  N+    +YI+ +S+L       PKY+LY  +    N+    + L  I    L
Sbjct: 1119 PVLATRTPNIEDCFVYIHPTSILNNLGEMPPKYMLYYSLHLGGNNKTRMNTLCDIASTPL 1178

Query: 1414 GNI 1416
             NI
Sbjct: 1179 ANI 1181

 Score = 18.1 bits (35), Expect = 6.6
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 363 DYNKMEPHGSYDDSDMD 379
           +  +++ HG  D+ D D
Sbjct: 253 EMEELKKHGKEDEMDFD 269

 Score = 18.1 bits (35), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 11  DINTTFIKDDEEKKE 25
           D +TT   DDEE+ +
Sbjct: 267 DFDTTSEDDDEEEDQ 281

 Score = 17.7 bits (34), Expect = 8.6
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 855 SNINTYELNNNTKKKSSIWK 874
           SNI      + T KK   W+
Sbjct: 230 SNIKVINKESKTPKKKYNWR 249

Lambda     K      H
   0.316    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3574
Number of extensions: 171
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 1566
Length of database: 1267
Length adjustment: 49
Effective length of query: 1517
Effective length of database: 1218
Effective search space:  1847706
Effective search space used:  1847706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (18.4 bits)
S2: 34 (17.7 bits)