>5 exonuclease complex with Rrp4p, Rrp41p, Rrp43p and Dis3p">YDL111C RRP42 SGDID:S000002269, Chr IV from 264110-263313, reverse
           complement, Verified ORF, "Protein involved in rRNA
           processing; component of the exosome 3->5 exonuclease
           complex with Rrp4p, Rrp41p, Rrp43p and Dis3p"
          Length = 265

 Score = 51.6 bits (122), Expect = 2e-11
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 31/244 (12%)

Query: 5   NYIEDSINC--NIRIDGRTLLTYRSIEINKNILVSGDGSSSVI-NEENNVICGIKLSLIT 61
           +Y+ DS+    +IR DGR    +R IEI  + L S +GSS +I ++ +  I  IK  ++ 
Sbjct: 9   SYLYDSLASTPSIRPDGRLPHQFRPIEIFTDFLPSSNGSSRIIASDGSECIVSIKSKVVD 68

Query: 62  PDVDTYDEGNVNLQIDCPASVAANRIKKDHLQTMTTXXXXXXXXXXXXXXXXXXXPGKFA 121
             V+     N  LQ+D    +A  R     ++T+T+                     K++
Sbjct: 69  HHVE-----NELLQVD--VDIAGQRDDALVVETITSLLNKVLKSGSGVDSSKLQLTKKYS 121

Query: 122 WSVDINVMVLNAGGGLLDIISIAIYVALKDTFFXXXXXXXXXXXXN---TFHEISNKDYQ 178
           + + ++V+V+++    + +IS AIY AL  T+                 TFH     DY 
Sbjct: 122 FKIFVDVLVISSHSHPVSLISFAIYSALNSTYLPKLISAFDDLEVEELPTFH-----DYD 176

Query: 179 LEIVENEHVNFPYENIPICISIGEINNKYIYDMSKVEEELVQNIFVVA-----ITSKGKC 233
           +  ++         N P+   +  + N  + D +  E E+  N  +++     ITS  + 
Sbjct: 177 MVKLD--------INPPLVFILAVVGNNMLLDPAANESEVANNGLIISWSNGKITSPIRS 228

Query: 234 VAFH 237
           VA +
Sbjct: 229 VALN 232

Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 152
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 265
Length adjustment: 25
Effective length of query: 253
Effective length of database: 240
Effective search space:    60720
Effective search space used:    60720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)