Query= MAL13P1.209 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 60S ribosomal
subunit porotein L18, putative
(188 letters)
>YOL120C RPL18A SGDID:S000005480, Chr XV from
94402-94291,93843-93395, reverse complement, Verified
ORF, "Protein component of the large (60S) ribosomal
subunit, identical to Rpl18Bp and has similarity to rat
L18 ribosomal protein; intron of RPL18A pre-mRNA forms
stem-loop structures that are a target for Rnt1p
cleavage leading to degradation"
Length = 186
Score = 164 bits (415), Expect = 9e-46
Identities = 85/168 (50%), Positives = 114/168 (67%), Gaps = 5/168 (2%)
Query: 22 SKNPYLRLLVKLYNFLARRTNANFNKIIAKRLIMPKRYRPPLSLSKLQYHMANH--PNDI 79
S N YL+LLVKLY FLARRT+A FNK++ K L + K RPP+S+S++ + N
Sbjct: 21 SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 80
Query: 80 AVVVGSITDDKRLFSLKQLKVCALRFTETARKRIEDAGGECLTFDQLALKYPTGKKCVLL 139
VVVG++TDD R+F + V ALRFT AR +I AGGEC+T DQLA++ P G+ ++L
Sbjct: 81 VVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLIL 140
Query: 140 RGPTKARTAEKHFGKAPGKPKSKARPYVRSKGRKFEKARGRRKSRAYK 187
RGP +R A +HFG P K K+ P + S GRKFE+ARGRR+S+ +K
Sbjct: 141 RGPRNSREAVRHFGMGPHKGKA---PRILSTGRKFERARGRRRSKGFK 185
Lambda K H
0.322 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 119
Number of extensions: 7
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 186
Length adjustment: 20
Effective length of query: 168
Effective length of database: 166
Effective search space: 27888
Effective search space used: 27888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 18 (11.2 bits)
S2: 18 (11.5 bits)