>YBL097W BRN1 SGDID:S000000193, Chr II from 40828-43092, Verified
           ORF, "Essential protein required for chromosome
           condensation, likely to function as an intrinsic
           component of the condensation machinery, may influence
           multiple aspects of chromosome transmission and
           dynamics"
          Length = 754

 Score = 52.4 bits (124), Expect = 1e-10
 Identities = 68/340 (20%), Positives = 134/340 (39%), Gaps = 54/340 (15%)

Query: 36  RLTFLNNESNDSIEGNKNKYDKNKVKEINDVFKNCMVALSHNKICTRNAFDIHIIEHLED 95
           +L + NN+ ++ +E   N +        N  F+  +   + NKI +RN+++  +I++  D
Sbjct: 4   QLRYENNDDDERVE--YNLFTNRSTMMAN--FEEWIKMATDNKINSRNSWNFALIDYFYD 59

Query: 96  LINLNDEEIPEELNDEMIENGEFNLSFTRASKAIEGATKVYGYRVEAIYDQTYNFLTNMN 155
           L              +++++GE N++F +AS  ++G  K+Y  RV+++  +T   L+ + 
Sbjct: 60  L--------------DVLKDGENNINFQKASATLDGCIKIYSSRVDSVTTETGKLLSGLA 105

Query: 156 LAKQFELDN-------------DMMDDNKNTIDPLN----------KRMRKRKLTYLQES 192
             K     N                D+    IDPL              R+R    + E 
Sbjct: 106 QRKTNGASNGDDSNGGNGEGLGGDSDEANIEIDPLTGMPISNDPDVNNTRRRVYNRVLE- 164

Query: 193 STLAKSSDITVDSLSLSNISVDTFFLKLNSTYDHSCGQKYXXXXXXXXXXXSIQFDGDI- 251
           +TL +   I +  L    + +D  F K    +D    +              + FD  I 
Sbjct: 165 TTLVEFETIKMKELD-QELIIDPLFKKALVDFDEGGAKSLLLNTLNIDNTARVIFDASIK 223

Query: 252 ---DVCEYKKRRKTLDDIGKDG-VKDKEDGIHIIMKNKNDDNCD---TYXXXXXXXXXXX 304
              +V + K +RK  + I +D  V D+ +    ++  +ND   +                
Sbjct: 224 DTQNVGQGKLQRKEEELIERDSLVDDENEPSQSLISTRNDSTVNDSVISAPSMEDEILSL 283

Query: 305 XVDEKKNNDVDICENRNKKNESCNIYVDTFNVNEHKEFFD 344
            +D  K + + +CE      +  N+  D   +N+ K+F +
Sbjct: 284 GMDFIKFDQIAVCEISGSIEQLRNVVED---INQAKDFIE 320

 Score = 38.9 bits (89), Expect = 1e-06
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 19/127 (14%)

Query: 896  VPFENVSKFVDVAKIKKILCDIVKPNEEQKSNTNDSLCEYQTEKDNQIVTYTAEKTTTFE 955
            V +  VSK VDV ++KK +   +          N+ + E+ + K+ +  +  +E T T +
Sbjct: 636  VTYSRVSKKVDVRRLKKNVWRSI----------NNLIQEHDSRKNREQSSNDSE-THTED 684

Query: 956  EIVKEVKHNEYNKD-KNIYNTTTAKLNESEASSTSIHMLFVCLLYTCNDQELLLEKIPNQ 1014
            E  KE+K ++  +    +Y+  T K         S    F+CLL+  N+  L +    N 
Sbjct: 685  ESTKELKFSDIIQGISKMYSDDTLK-------DISTSFCFICLLHLANEHGLQITHTENY 737

Query: 1015 NNFYVRY 1021
            N+  V Y
Sbjct: 738  NDLIVNY 744

 Score = 28.5 bits (62), Expect = 0.002
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 2   KKLGVNNAGENKGNSIQN--KDGTNKKTIEVNKNMRRLTFLNNES------NDSIEGNKN 53
           KK+ V    +N   SI N  ++  ++K  E + N    T   +ES      +D I+G   
Sbjct: 643 KKVDVRRLKKNVWRSINNLIQEHDSRKNREQSSNDSE-THTEDESTKELKFSDIIQGISK 701

Query: 54  KYDKNKVKEINDVFKNCMVALSHNKICTRNAFDIHIIEHLEDLINLNDEEI 104
            Y  + +K+I+  F  C + L H  +   +   I   E+  DLI +N E++
Sbjct: 702 MYSDDTLKDISTSF--CFICLLH--LANEHGLQITHTENYNDLI-VNYEDL 747

 Score = 19.2 bits (38), Expect = 1.1
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 247 FDGDIDVCEYKKRRKTLDDIGKDGVK----DKEDGIHIIMKNK 285
           F+ D+D  ++ +  +  DD  +  VK    D ED    I +NK
Sbjct: 593 FEDDMDGVDFNQAFEGTDDNEEASVKLDLQDDEDHKFPIRENK 635

 Score = 17.7 bits (34), Expect = 3.3
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 109 NDEMIENGEFNLSFTRASKAIEGATKVYGYRVEAIYDQTYNFLTNMNLAKQFEL 162
           ND      + +    + S  I+G +K+Y          ++ F+  ++LA +  L
Sbjct: 676 NDSETHTEDESTKELKFSDIIQGISKMYSDDTLKDISTSFCFICLLHLANEHGL 729

 Score = 17.3 bits (33), Expect = 4.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 671 DVTSIDFENLYTENNNIELSTYDLWKK 697
           + T ++FE +  +  + EL    L+KK
Sbjct: 164 ETTLVEFETIKMKELDQELIIDPLFKK 190

 Score = 16.5 bits (31), Expect = 7.4
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 411 NDDDIGNT 418
           ND D+ NT
Sbjct: 147 NDPDVNNT 154

 Score = 16.5 bits (31), Expect = 7.4
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 412 DDDIGNTDKNNIINFYDEN 430
           +DD+   D N      D+N
Sbjct: 594 EDDMDGVDFNQAFEGTDDN 612

 Score = 16.2 bits (30), Expect = 9.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 320 RNKKNESCNIYVDTFN 335
           +N+KN++  +  D F+
Sbjct: 488 KNRKNDTHYLLPDDFH 503

Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2252
Number of extensions: 145
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 1039
Length of database: 754
Length adjustment: 43
Effective length of query: 996
Effective length of database: 711
Effective search space:   708156
Effective search space used:   708156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)