>YHR197W RIX1 SGDID:S000001240, Chr VIII from 493896-496187, Verified
            ORF, "Essential protein involved in the processing of the
            ITS2 region of the rRNA locus; required for the
            maturation and nuclear export of the 60S ribosomal
            subunit"
          Length = 763

 Score = 36.2 bits (82), Expect = 3e-05
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 2289 LFYNHDNLFYHKDHFFKEREYVKKVQKQSTKECKEASYYYSKSGSVNSLQYNEKELFSCP 2348
            LF +HD      D  FK R   K + KQ TK  K++    S  G+ + + Y   ELF C 
Sbjct: 465  LFLSHDKTLI--DSLFKNR---KSIMKQQTKT-KQSKRSKSAEGAFSDI-YTHPELFVCK 517

Query: 2349 NYMKYIKYFIQYYFELINTKNIVDRNNKEIL-YKYTDYVDLK 2389
            N M +      ++   +N   +    + +IL Y  T  + LK
Sbjct: 518  NSMNWFNEINDFFITALNNWILPSTPHIQILKYSITQSLRLK 559

 Score = 19.6 bits (39), Expect = 3.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 2251 NNTNENMQSKKAKDNLE 2267
            +N N  +++ KA +NLE
Sbjct: 647  SNANTGLETLKALENLE 663

 Score = 19.2 bits (38), Expect = 3.9
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 1554 IYENNYETFVLYSNILNRNNGTRLFS 1579
            IY    +    YS++++ ++G +LF+
Sbjct: 93   IYSRLEQKTGFYSSVISSSHGKQLFN 118

 Score = 19.2 bits (38), Expect = 3.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 3061 EIDENHLLYNYIKILKDIEENQKLEK 3086
            + ++++ LY  IK L  I+E+   E+
Sbjct: 266  DFEQDNELYKLIKSLPVIDESNNKEE 291

 Score = 18.9 bits (37), Expect = 5.1
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 1487 RNSTKSKRNEDTENLKEETIQNNKEEVHIDNNLIEEKKVDLKINDN 1532
            R ST S +        EET  +N EE+ +   + + K+ +  + D+
Sbjct: 695  RESTSSHKKV---KFVEETTVDNGEELIVKKAVSQTKEEEKPMEDS 737

 Score = 18.5 bits (36), Expect = 6.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 98  VFDEKNNKKIF 108
           V DE NNK+ F
Sbjct: 282 VIDESNNKEEF 292

 Score = 18.5 bits (36), Expect = 6.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 1181 NFFYNLTHDNNEFITLKTYRNNE 1203
            +FF  +      FI LK   NNE
Sbjct: 398  SFFEGILSSIELFIPLKKKSNNE 420

 Score = 18.5 bits (36), Expect = 6.7
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 3103 IYKKSDKNNFEDPFRNRKTL 3122
            ++   DK   +  F+NRK++
Sbjct: 465  LFLSHDKTLIDSLFKNRKSI 484

 Score = 18.1 bits (35), Expect = 8.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 1430 IKKTTINKRGGRKPKNKVEDIKKEDNE 1456
            +KK     +   KP    ED ++E+ E
Sbjct: 720  VKKAVSQTKEEEKPMEDSEDEEQEEFE 746

Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4400
Number of extensions: 213
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 9
Length of query: 3482
Length of database: 763
Length adjustment: 51
Effective length of query: 3431
Effective length of database: 712
Effective search space:  2442872
Effective search space used:  2442872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (19.0 bits)
S2: 35 (18.1 bits)