Query= MAL13P1.341 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein, conserved
(222 letters)
>YKL009W MRT4 SGDID:S000001492, Chr XI from 425885-426595, Verified
ORF, "Protein involved in mRNA turnover and ribosome
assembly, localizes to the nucleolus"
Length = 236
Score = 46.2 bits (108), Expect = 5e-10
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 42 YVYVL---DIRTYSNNNLKVAIEHFKPNGKFFIGKNKLMKLALGINENNEVKPNMSKISE 98
YV+VL D+RT ++ + K +GK K+++ ALG E K N+ ++S+
Sbjct: 39 YVWVLHLDDVRTPVLQEIRTSWA----GSKLIMGKRKVLQKALGEKREEEYKENLYQLSK 94
Query: 99 LLIGNRILLITKDGPLSVLKFFNEFQPEEYIKHGNISPQDITLKCGEVLN----VP---- 150
L G LL T + +V ++F + +Y + +P T+ G V + +P
Sbjct: 95 LCSGVTGLLFTDEDVNTVKEYFKSYVRSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEED 154
Query: 151 VSMQKDLQKRKLNFDIVDQKIILKENKVLAEKDKLISLENSK-------ILRMLNMKIAF 203
V M L+ N + KI K K+ + L+ E K IL+ + +
Sbjct: 155 VPMIHSLEPTMRNKFEIPTKI--KAGKITIDSPYLVCTEGEKLDVRQALILKQFGIAASE 212
Query: 204 FDITVLGYW 212
F + V Y+
Sbjct: 213 FKVKVSAYY 221
Lambda K H
0.320 0.139 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 236
Length adjustment: 23
Effective length of query: 199
Effective length of database: 213
Effective search space: 42387
Effective search space used: 42387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 20 (12.1 bits)
S2: 20 (12.3 bits)