>YFR004W RPN11 SGDID:S000001900, Chr VI from 153388-154308, Verified
           ORF, "Metalloprotease subunit of the 19S regulatory
           particle of the 26S proteasome lid; couples the
           deubiquitination and degradation of proteasome
           substrates"
          Length = 306

 Score =  318 bits (815), Expect = 1e-91
 Identities = 155/282 (54%), Positives = 199/282 (70%)

Query: 28  DTSEQVYISPLALLKILKHGRAGVPMEVMGLMLGEIVDEYTIRIVDVFAMPQSGNSVSVE 87
           DT E VYIS +ALLK+LKHGRAGVPMEVMGLMLGE VD+YT+ +VDVFAMPQSG  VSVE
Sbjct: 22  DTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVE 81

Query: 88  AVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGFGCWLSGTDVNTQKSFEQLNPRTIGVVV 147
           AVD V+Q  M++ LK+TGR +MVVGWYHSHPGFGCWLS  DVNTQKSFEQLN R + VVV
Sbjct: 82  AVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVV 141

Query: 148 DPIQSVKGKVVIDCFRLINPHILMLGQEPRQTTSNIGYLTKPTLTALVHGLNRNYYSIVI 207
           DPIQSVKGKVVID FRLI+   L+   EPRQTTSN G L K  + AL+HGLNR+YYS+ I
Sbjct: 142 DPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNI 201

Query: 208 NYRXXXXXXXXXXXXHKDMWTNPLKLNDFHEQKKSSDETLEDIKKLTTLYNKNLRNEMKK 267
           +Y             HK+ W + LK+ D+ E+++S+    + + K+   Y+K +  E + 
Sbjct: 202 DYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEEEKEL 261

Query: 268 TSEEILLENIGKIDAKKRIQNSVETLLNESILTCIGTMANTL 309
           T EE+    +G+ D KK +  + +  L  +I++ +    N++
Sbjct: 262 TEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSV 303

 Score = 13.9 bits (24), Expect = 5.4
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 10  ELFYSFSDGNGMNNETLADTSEQVYISPLALLKILKHG 47
           + F     G  +NN     T+    +   A ++ L HG
Sbjct: 154 DAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHG 191

Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 277
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 306
Length adjustment: 27
Effective length of query: 284
Effective length of database: 279
Effective search space:    79236
Effective search space used:    79236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 22 (13.0 bits)
S2: 22 (13.1 bits)