>YNL016W PUB1 SGDID:S000004961, Chr XIV from 602908-604269, Verified
           ORF, "Poly(A)+ RNA-binding protein, abundant
           mRNP-component protein hypothesized to bind a pool of
           non-translatable mRNAs; not reported to associate with
           polyribosomes"
          Length = 453

 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 30  NVLKDYIYLD-PIKNINTLIDYILDNINNSDIEKNICHYLSDVIIYIQDINKIVNEENNT 88
           ++LK Y  +  PI NI  +ID    N+N + +E +  H   D  I +Q +N     ENN 
Sbjct: 89  DILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSH---DANIALQTLNG-KQIENNI 144

Query: 89  I------EEKLDENDYSNSLYYEEYRINVKDEKLK 117
           +      + +   +D + +L+  +  +NV DE L+
Sbjct: 145 VKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLR 179

 Score = 16.5 bits (31), Expect = 3.1
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 18/60 (30%)

Query: 128 LIQNCTRNVNYLKLMYIISNVILPKNGYVLFINIFHKHEINYQYKLLSLEYFANIANKIN 187
           +I    +NVNY                   F+     H+ N   + L+ +   N   KIN
Sbjct: 107 MIDKNNKNVNY------------------AFVEYHQSHDANIALQTLNGKQIENNIVKIN 148

 Score = 15.4 bits (28), Expect = 6.9
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 78  INKIVNEENNTIEEKLDENDYSNS 101
           IN     +NN         +Y N+
Sbjct: 235 INWAAKRDNNNNNNYQQRRNYGNN 258

 Score = 15.4 bits (28), Expect = 6.9
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 741 NVNANTNTN 749
           N+N N N N
Sbjct: 279 NMNMNMNMN 287

Lambda     K      H
   0.321    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 823
Number of extensions: 53
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 752
Length of database: 453
Length adjustment: 36
Effective length of query: 716
Effective length of database: 417
Effective search space:   298572
Effective search space used:   298572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.4 bits)
S2: 27 (15.0 bits)