>YMR290C HAS1 SGDID:S000004903, Chr XIII from 851590-850073, reverse
           complement, Verified ORF, "ATP-dependent RNA helicase;
           localizes to both the nuclear periphery and nucleolus;
           highly enriched in nuclear pore complex fractions;
           constituent of 66S pre-ribosomal particles"
          Length = 505

 Score =  110 bits (275), Expect = 2e-28
 Identities = 68/182 (37%), Positives = 105/182 (57%), Gaps = 7/182 (3%)

Query: 172 KFCDLKYILSESLINTLEKNEFIKMTSIQKMSIPLFFKPNDIFLKSMTGSGKTLCYAIPS 231
           KF +LK  LS+  +  +EK  F  MTS+Q  +IP      D+   + TGSGKTL + IP+
Sbjct: 43  KFEELK--LSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPA 100

Query: 232 IEKILNMKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTKPYPYIVASCITGGEXXX 291
           IE + ++K K +     G  ++V++PTRELA+QI  +   L + +       I GG    
Sbjct: 101 IELLHSLKFKPR----NGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVI-GGANRR 155

Query: 292 XXXXXXXXGISILTCTPGRLLDHLENTKSLKLTFLKMVILDEADKIIYLGTQDKIKLIYD 351
                   G+++L  TPGRLLDHL+NTK      LK +I+DEAD+I+ +G +D+++ I  
Sbjct: 156 QEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIK 215

Query: 352 MI 353
           ++
Sbjct: 216 IL 217

 Score = 73.2 bits (178), Expect = 4e-17
 Identities = 46/198 (23%), Positives = 94/198 (47%), Gaps = 24/198 (12%)

Query: 665 LFNNVNIYIL--HGNLSKEDRLGNFMDFSKTNNSILLCTDIISRGIHFDSLSVVIQYDPP 722
           L N +++ +L  HG   ++ R   F +F      IL+CTD+ +RG+   ++  +IQ+DPP
Sbjct: 308 LLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPP 367

Query: 723 QILEEYIHKVGRTARLNK-QGSAYLFLLKSQKQFXXXXXXXXXXXXXXXXXTIINHFKKF 781
               +YIH+VGRTAR  K +G + +FL  ++  F                   + + K  
Sbjct: 368 DDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGF-------------------LRYLKAS 408

Query: 782 CIPNFLKSVGKDILNFLHNHMQTIVKSNNTLMEKGTSAFLCTITSFYSTSKNLRSIFNAK 841
            +P       ++ +  + + ++ ++KSN  L +     +   + ++   S +L++++   
Sbjct: 409 KVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAY--ASHSLKTVYQID 466

Query: 842 DIHLGHLAYTFLLEKTPK 859
            + L  +A ++     PK
Sbjct: 467 KLDLAKVAKSYGFPVPPK 484

 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 523 LKQYCILIDMKQKFICLIYMLLDCIEKKKKPVVFLSNHHSVEYLQILLKNIYWP 576
           L+Q  ++ D  ++F+ L   L     +KKK +VFLS+ +SV+Y   LL  I  P
Sbjct: 264 LEQGYVVCDSDKRFLLLFSFLKR--NQKKKIIVFLSSCNSVKYYAELLNYIDLP 315

 Score = 15.8 bits (29), Expect = 7.1
 Identities = 4/13 (30%), Positives = 10/13 (76%)

Query: 410 FISATLNHAMKTL 422
           ++ A  +H++KT+
Sbjct: 450 YLQAYASHSLKTV 462

Lambda     K      H
   0.319    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 779
Number of extensions: 25
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 899
Length of database: 505
Length adjustment: 39
Effective length of query: 860
Effective length of database: 466
Effective search space:   400760
Effective search space used:   400760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)