Query= MAL7P1.113 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) DEAD box
helicase, putative
(899 letters)
>YMR290C HAS1 SGDID:S000004903, Chr XIII from 851590-850073, reverse
complement, Verified ORF, "ATP-dependent RNA helicase;
localizes to both the nuclear periphery and nucleolus;
highly enriched in nuclear pore complex fractions;
constituent of 66S pre-ribosomal particles"
Length = 505
Score = 110 bits (275), Expect = 2e-28
Identities = 68/182 (37%), Positives = 105/182 (57%), Gaps = 7/182 (3%)
Query: 172 KFCDLKYILSESLINTLEKNEFIKMTSIQKMSIPLFFKPNDIFLKSMTGSGKTLCYAIPS 231
KF +LK LS+ + +EK F MTS+Q +IP D+ + TGSGKTL + IP+
Sbjct: 43 KFEELK--LSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPA 100
Query: 232 IEKILNMKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTKPYPYIVASCITGGEXXX 291
IE + ++K K + G ++V++PTRELA+QI + L + + I GG
Sbjct: 101 IELLHSLKFKPR----NGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVI-GGANRR 155
Query: 292 XXXXXXXXGISILTCTPGRLLDHLENTKSLKLTFLKMVILDEADKIIYLGTQDKIKLIYD 351
G+++L TPGRLLDHL+NTK LK +I+DEAD+I+ +G +D+++ I
Sbjct: 156 QEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIK 215
Query: 352 MI 353
++
Sbjct: 216 IL 217
Score = 73.2 bits (178), Expect = 4e-17
Identities = 46/198 (23%), Positives = 94/198 (47%), Gaps = 24/198 (12%)
Query: 665 LFNNVNIYIL--HGNLSKEDRLGNFMDFSKTNNSILLCTDIISRGIHFDSLSVVIQYDPP 722
L N +++ +L HG ++ R F +F IL+CTD+ +RG+ ++ +IQ+DPP
Sbjct: 308 LLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPP 367
Query: 723 QILEEYIHKVGRTARLNK-QGSAYLFLLKSQKQFXXXXXXXXXXXXXXXXXTIINHFKKF 781
+YIH+VGRTAR K +G + +FL ++ F + + K
Sbjct: 368 DDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGF-------------------LRYLKAS 408
Query: 782 CIPNFLKSVGKDILNFLHNHMQTIVKSNNTLMEKGTSAFLCTITSFYSTSKNLRSIFNAK 841
+P ++ + + + ++ ++KSN L + + + ++ S +L++++
Sbjct: 409 KVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAY--ASHSLKTVYQID 466
Query: 842 DIHLGHLAYTFLLEKTPK 859
+ L +A ++ PK
Sbjct: 467 KLDLAKVAKSYGFPVPPK 484
Score = 30.4 bits (67), Expect = 3e-04
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 523 LKQYCILIDMKQKFICLIYMLLDCIEKKKKPVVFLSNHHSVEYLQILLKNIYWP 576
L+Q ++ D ++F+ L L +KKK +VFLS+ +SV+Y LL I P
Sbjct: 264 LEQGYVVCDSDKRFLLLFSFLKR--NQKKKIIVFLSSCNSVKYYAELLNYIDLP 315
Score = 15.8 bits (29), Expect = 7.1
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 410 FISATLNHAMKTL 422
++ A +H++KT+
Sbjct: 450 YLQAYASHSLKTV 462
Lambda K H
0.319 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 779
Number of extensions: 25
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 899
Length of database: 505
Length adjustment: 39
Effective length of query: 860
Effective length of database: 466
Effective search space: 400760
Effective search space used: 400760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)