>YMR304W UBP15 SGDID:S000004920, Chr XIII from 874986-878678, Verified
            ORF, "Ubiquitin-specific protease that may play a role in
            ubiquitin precursor processing"
          Length = 1230

 Score =  201 bits (510), Expect = 1e-54
 Identities = 122/353 (34%), Positives = 191/353 (54%), Gaps = 32/353 (9%)

Query: 926  LALQNLFYKLHTVNEAVSCKELIRSFGWDASDVFTQQDTHEXXXXXXDKVEEQMKGTVVE 985
            LALQ  FY+L   +  +   EL RSFGWD ++ FTQ D  E      D++E  MKGT VE
Sbjct: 249  LALQRAFYQLQVSDIPLDTLELTRSFGWDTAESFTQHDVQELNRILMDRLENNMKGTPVE 308

Query: 986  GSVKKMFEGEVETYIECLDIDYKSIRKETYEDIQLDVQGCNNIYESLDKAIEAEILEGDN 1045
            G + ++F G++++YI+C+++DY+S R E + D+QL+V+   N+ ES D  IE E++ G+N
Sbjct: 309  GKLNEIFVGKMKSYIKCINVDYESARVEDFWDLQLNVKNFKNLQESFDNYIEMELMNGEN 368

Query: 1046 IYETDGYGKQKAKKGMRFLSFPNICIFLLKRFTFDLQRMETVKLNNRFEFYKELDLSKYC 1105
             Y    YG Q A+KG+ F SFP +    LKRF +D    + VK+N+++EF + +DLS + 
Sbjct: 369  QYAAQDYGLQDAQKGVIFESFPPVLHLQLKRFEYDFNYDQMVKVNDKYEFPETIDLSPFV 428

Query: 1106 ------------NKSGSQYV--LQAVSVHQGNMNSGHYYSFSYKHNENFWLKCDDDKIFR 1151
                        NK  + YV  L  V VH G++++GHYY+      E+ W + DD++++R
Sbjct: 429  DKDVLKKTLDSENKDKNPYVYNLHGVLVHSGDISTGHYYTLIKPGVEDQWYRFDDERVWR 488

Query: 1152 VSEYSVIXXXXXXXXXXXXXXXXXXXISDKIKQRLKNY------SAYMLVYVKKSLIPKL 1205
            V++  V                    +    +   +NY      SAYMLVY+++     L
Sbjct: 489  VTKKQVF------QENFGCDRLPDEKVRTMTRGEYQNYIIQRHTSAYMLVYIRQEQEEDL 542

Query: 1206 IKECDPAVVNPQVVKRCRLEEIINKKRYKLKDEILE---YVKIRVFDKYSYVH 1255
            ++    + V   V+ R R EEI  K+R   + EI E   YV +R+     ++H
Sbjct: 543  LRPVLESDVPKHVITRVR-EEI--KERETKEKEIREAHLYVTLRLHSIKEFIH 592

 Score = 62.0 bits (149), Expect = 8e-13
 Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 12/102 (11%)

Query: 196 HFNFNHLNTDRGWHNFVPFEKLREPG------FISE---NGEIILRAGVFPFGSESYKNS 246
           H  FN L+TD G+ N +    L+ P       F++E   N    +R    P G   +   
Sbjct: 135 HHRFNALDTDWGFANLIDLNNLKHPSKGRPLSFLNEGTLNITAYVRILKDPTGVLWHNF- 193

Query: 247 RDINYDSKMRTGFVGLKNHGATCYMNALLQLLYHINIFRKAV 288
             +NYDSK  TG+VG +N GATCY+N+LLQ  +    FRK V
Sbjct: 194 --LNYDSKKVTGYVGFRNQGATCYLNSLLQSYFFTKYFRKLV 233

 Score = 21.6 bits (44), Expect = 1.2
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 2842 LTSPVNYSSYNIDSFTYKTDHTDYSNYQKHNNVVQYGQAPFDALLKQHSMLLE 2894
            LT P+N+ S NI      T        +K     QYG+    +  +    LLE
Sbjct: 663  LTQPINFESVNI------TLQEALKKEKKRTMQTQYGEEGVASTEEDDKALLE 709

 Score = 20.4 bits (41), Expect = 2.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 986  GSVKKMFEGEVETYIE 1001
            GS+   F+ EVET +E
Sbjct: 24   GSILPQFDEEVETLLE 39

 Score = 20.4 bits (41), Expect = 2.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 2782 KNIKKNFPNYIDSHFL 2797
            KN++++F NYI+   +
Sbjct: 349  KNLQESFDNYIEMELM 364

 Score = 19.2 bits (38), Expect = 5.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 95  NYKNLRPVNENEIELVVDN 113
           N+KNL+   +N IE+ + N
Sbjct: 347 NFKNLQESFDNYIEMELMN 365

Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7702
Number of extensions: 374
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 3183
Length of database: 1230
Length adjustment: 54
Effective length of query: 3129
Effective length of database: 1176
Effective search space:  3679704
Effective search space used:  3679704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (19.8 bits)
S2: 37 (18.9 bits)