>YGL011C SCL1 SGDID:S000002979, Chr VII from 475252-474494, reverse
           complement, Verified ORF, "Alpha subunit of the 20S core
           complex of the 26S proteasome involved in the
           degradation of ubiquitinated substrates; essential for
           growth; detected in the mitochondria"
          Length = 252

 Score =  141 bits (355), Expect = 2e-38
 Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 43/284 (15%)

Query: 5   SQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSVGVKGENCAVIISQKKMATQYISQD 64
           S + YDRH+TIFSP+G LYQ+EYA KA   TNI S+ V+G++C V+ISQKK+       D
Sbjct: 8   SAAGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVP------D 61

Query: 65  KLLDXXXXXXXXXXXDEIGCSMVGMPGDCLSMVYKARSEASEFLYSNGYNVNAETLCRNI 124
           KLLD             IG  + G   D  +   +A++EA+EF Y  GY++  + L + +
Sbjct: 62  KLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRM 121

Query: 125 CDKIQVYTQHAYMRLHACSNIYIYIYMNICTCVFIFLHKCVKCGMI---IGIDENNKPEL 181
            +  Q+YTQ AYMR                             G+I   + +DE   P +
Sbjct: 122 ANLSQIYTQRAYMR---------------------------PLGVILTFVSVDEELGPSI 154

Query: 182 FKFDPSGFCAGYRACVIGNKEQE-SISVXXXXXXXXXXXIQQETIDEDIRNTTILAIEAL 240
           +K DP+G+  GY+A   G K+QE + ++           I +E+ ++ +       I+AL
Sbjct: 155 YKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDAL 214

Query: 241 QTILAFDLKASEIEVAIVSTKNRNFTQISEKEIDNYLTYIAERD 284
            T    +   +++EV  V+TK++ FT +S + I+  L  IAE+D
Sbjct: 215 GT----EFSKNDLEVG-VATKDKFFT-LSAENIEERLVAIAEQD 252

Lambda     K      H
   0.322    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 178
Number of extensions: 6
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 252
Length adjustment: 25
Effective length of query: 259
Effective length of database: 227
Effective search space:    58793
Effective search space used:    58793
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.6 bits)
S2: 21 (12.7 bits)