>YER154W OXA1 SGDID:S000000956, Chr V from 475015-476223, Verified
           ORF, "Translocase of the mitochondrial inner membrane,
           mediates the insertion of both mitochondrial- and
           nuclear-encoded proteins from the matrix into the inner
           membrane, interacts with mitochondrial ribosomes; null
           is respiratory deficient"
          Length = 402

 Score = 44.3 bits (103), Expect = 1e-08
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 305 TWY--VKLIYDLLNSTKLFFDCTWMSSIIMTTLFMRIIILPLTISSERDRRKQKILSPLL 362
           TWY    +I  +L +  ++    W  +I  TT+ +R ++ PL + S     +   + P L
Sbjct: 105 TWYWPSDIIQHVLEAVHVYSGLPWWGTIAATTILIRCLMFPLYVKSSDTVARNSHIKPEL 164

Query: 363 KELTKKLKDNAQDGNIKKAVEFKKKILNIRNTHGISLIPKSIILMAFFQTPLFFIFYFSM 422
             L  KL         +     +KK+L   ++HGI       +     Q P+   F+ ++
Sbjct: 165 DALNNKLMSTTDLQQGQLVAMQRKKLL---SSHGIK---NRWLAAPMLQIPIALGFFNAL 218

Query: 423 KRIASYP 429
           + +A+YP
Sbjct: 219 RHMANYP 225

 Score = 17.3 bits (33), Expect = 1.2
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 10/48 (20%)

Query: 362 LKELTKKLKDNA------QDGNIKKAVEFKKKILNIRNTHGISLIPKS 403
           LK   +K +D A      QD   K    FK+K    R    I ++ KS
Sbjct: 352 LKHNIQKARDQAERRQLMQDNEKKLQESFKEK----RQNSKIKIVHKS 395

Lambda     K      H
   0.325    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 358
Number of extensions: 17
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 589
Length of database: 402
Length adjustment: 34
Effective length of query: 555
Effective length of database: 368
Effective search space:   204240
Effective search space used:   204240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (15.0 bits)
S2: 26 (14.6 bits)