Query= MAL8P1.19 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein, conserved
(1289 letters)
>YGL078C DBP3 SGDID:S000003046, Chr VII from 361862-360291, reverse
complement, Verified ORF, "Putative ATP-dependent RNA
helicase of the DEAD-box family involved in ribosomal
biogenesis"
Length = 523
Score = 130 bits (327), Expect = 3e-34
Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 26/366 (7%)
Query: 161 FQQLGLSENMCRSIASNLKYNKPTNIQKLCITKILHRRDVICISKTGSGKSLVYLCTLID 220
F L L ++ I+ K+ KPT IQ + +L +DV+ +++TGSGK+ + I
Sbjct: 116 FDYLSLDSSIQAEIS---KFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172
Query: 221 ILKEHNKYYGIRGLIILPTKELVIQIY--------KLCKKICKNYFHLXXXXXXXXXXXX 272
L K GI+ L+I PT+EL QIY K+ + C Y
Sbjct: 173 HLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVY----------GGVPK 222
Query: 273 KQFDILNQNLDILLCTPGRLSFLLQETKLSLEKVEILIIDEADRLLELNYYNDMNVIYKS 332
+ I + +++ TPGRL LLQE + L +V L++DEADR+LE + D+ I +
Sbjct: 223 DEQRIQLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRE 282
Query: 333 LNNTSKQTILVSATLPTNVENYFKLKLNNPDVLFL--TSDNTINEKVH--LHFLFCRSYE 388
+ + +QT++ +AT P V +NNP + + T T N+++ + + R E
Sbjct: 283 TDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKE 342
Query: 389 XXXXXXXXXXXXXXXXXXXXXXXXCTKYHILFFSNILKHFKIHHSILYGNSDTSFRFEQI 448
K LK+ + + ++G+ R + +
Sbjct: 343 RKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQAL 402
Query: 449 NNFTKNEHIQFLLVTDVASRGINITSVQNVINYNLPFSPKLFIHRIGRACRTDISGYGIS 508
N F K+ LL TDVA+RG++I +V+ VIN P + + ++HRIGR R +G +
Sbjct: 403 NEF-KSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHT 461
Query: 509 LLTYQD 514
L T Q+
Sbjct: 462 LFTEQE 467
Score = 17.7 bits (34), Expect = 2.8
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 51 KKSKEDVSKRKD 62
KK K+D ++KD
Sbjct: 28 KKDKKDKKEKKD 39
Score = 17.3 bits (33), Expect = 3.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 1060 EELNKQRFVKKQIWDKKKRK 1079
EE+ +++ KK DKK +K
Sbjct: 16 EEVIEKKKSKKHKKDKKDKK 35
Score = 17.3 bits (33), Expect = 3.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 1058 ETEELNKQRFVKKQIWDKKKRKFVLT 1083
ET+ +Q + W K+ R+ T
Sbjct: 282 ETDASKRQTLMFTATWPKEVRELAST 307
Score = 16.5 bits (31), Expect = 6.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 1183 INMLKLMHPEISEALSKNNKLTKKQQ 1208
+N+L + + E L K TKK++
Sbjct: 475 VNVLNGANQPVPEDLIKFGTHTKKKE 500
Score = 16.2 bits (30), Expect = 8.2
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 1058 ETEELNKQRFVKKQIWDKKKRK 1079
++++ K + KK+ DKK +K
Sbjct: 23 KSKKHKKDKKDKKEKKDKKHKK 44
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1110
Number of extensions: 53
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 1289
Length of database: 523
Length adjustment: 41
Effective length of query: 1248
Effective length of database: 482
Effective search space: 601536
Effective search space used: 601536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)