>YGL078C DBP3 SGDID:S000003046, Chr VII from 361862-360291, reverse
           complement, Verified ORF, "Putative ATP-dependent RNA
           helicase of the DEAD-box family involved in ribosomal
           biogenesis"
          Length = 523

 Score =  130 bits (327), Expect = 3e-34
 Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 26/366 (7%)

Query: 161 FQQLGLSENMCRSIASNLKYNKPTNIQKLCITKILHRRDVICISKTGSGKSLVYLCTLID 220
           F  L L  ++   I+   K+ KPT IQ +    +L  +DV+ +++TGSGK+  +    I 
Sbjct: 116 FDYLSLDSSIQAEIS---KFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172

Query: 221 ILKEHNKYYGIRGLIILPTKELVIQIY--------KLCKKICKNYFHLXXXXXXXXXXXX 272
            L    K  GI+ L+I PT+EL  QIY        K+  + C  Y               
Sbjct: 173 HLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVY----------GGVPK 222

Query: 273 KQFDILNQNLDILLCTPGRLSFLLQETKLSLEKVEILIIDEADRLLELNYYNDMNVIYKS 332
            +  I  +   +++ TPGRL  LLQE  + L +V  L++DEADR+LE  +  D+  I + 
Sbjct: 223 DEQRIQLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRE 282

Query: 333 LNNTSKQTILVSATLPTNVENYFKLKLNNPDVLFL--TSDNTINEKVH--LHFLFCRSYE 388
            + + +QT++ +AT P  V       +NNP  + +  T   T N+++   +  +  R  E
Sbjct: 283 TDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKE 342

Query: 389 XXXXXXXXXXXXXXXXXXXXXXXXCTKYHILFFSNILKHFKIHHSILYGNSDTSFRFEQI 448
                                     K         LK+   + + ++G+     R + +
Sbjct: 343 RKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQAL 402

Query: 449 NNFTKNEHIQFLLVTDVASRGINITSVQNVINYNLPFSPKLFIHRIGRACRTDISGYGIS 508
           N F K+     LL TDVA+RG++I +V+ VIN   P + + ++HRIGR  R   +G   +
Sbjct: 403 NEF-KSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHT 461

Query: 509 LLTYQD 514
           L T Q+
Sbjct: 462 LFTEQE 467

 Score = 17.7 bits (34), Expect = 2.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 51 KKSKEDVSKRKD 62
          KK K+D  ++KD
Sbjct: 28 KKDKKDKKEKKD 39

 Score = 17.3 bits (33), Expect = 3.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 1060 EELNKQRFVKKQIWDKKKRK 1079
            EE+ +++  KK   DKK +K
Sbjct: 16   EEVIEKKKSKKHKKDKKDKK 35

 Score = 17.3 bits (33), Expect = 3.7
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 1058 ETEELNKQRFVKKQIWDKKKRKFVLT 1083
            ET+   +Q  +    W K+ R+   T
Sbjct: 282  ETDASKRQTLMFTATWPKEVRELAST 307

 Score = 16.5 bits (31), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 1183 INMLKLMHPEISEALSKNNKLTKKQQ 1208
            +N+L   +  + E L K    TKK++
Sbjct: 475  VNVLNGANQPVPEDLIKFGTHTKKKE 500

 Score = 16.2 bits (30), Expect = 8.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 1058 ETEELNKQRFVKKQIWDKKKRK 1079
            ++++  K +  KK+  DKK +K
Sbjct: 23   KSKKHKKDKKDKKEKKDKKHKK 44

Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1110
Number of extensions: 53
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 1289
Length of database: 523
Length adjustment: 41
Effective length of query: 1248
Effective length of database: 482
Effective search space:   601536
Effective search space used:   601536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)