>YGL171W ROK1 SGDID:S000003139, Chr VII from 182396-184090, Verified
           ORF, "ATP-dependent RNA helicase of the DEAD box family;
           required for 18S rRNA synthesis"
          Length = 564

 Score =  141 bits (355), Expect = 2e-37
 Identities = 100/350 (28%), Positives = 162/350 (46%), Gaps = 26/350 (7%)

Query: 180 YNKPTNIQKLCITKILHRRDVICISKTGSGKSLVYLCTLIDILKEHNKYYGIRGLIILPT 239
           + +PT IQ  CI   L+ RDV+    TGSGK+L +L  L+  + +  +  G++GLII PT
Sbjct: 142 FTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPT 201

Query: 240 KELVIQIYKLCKKICKNYFHLXXXXXXXXXXXXKQFD-------ILNQNLDILLCTPGRL 292
           KEL  QI+  C K+    F L            K          + ++  DI++ TP RL
Sbjct: 202 KELANQIFIECFKLSYKIF-LEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRL 260

Query: 293 SFLLQETKLSLEKVEILIIDEADRLLELNYYNDMNVIYKSLNNTSKQTILVSATLPTNVE 352
             +++   L L KV+ LI DEAD+L +  +    + I  +    S +  + SAT+P+NVE
Sbjct: 261 IDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSNVE 320

Query: 353 NYFKLKLNNPDVLFLTSDNTINEKVHLHFLFCRSYEXXXXXXXXXXXXXXXXXXXXXXXX 412
              +  + +P  + +      N  +    +FC + E                        
Sbjct: 321 EIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQEGEFKPPI----- 375

Query: 413 CTKYHILFFSNILKHFKIHHSILYGNSD--------TSFRFEQINNFTKNEHIQFLLVTD 464
                I+F  +I +   ++H ++Y   +        T+ + ++I    K   +  L+ TD
Sbjct: 376 -----IIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTD 430

Query: 465 VASRGINITSVQNVINYNLPFSPKLFIHRIGRACRTDISGYGISLLTYQD 514
           V +RGI+   V  VINY++P S + ++HRIGR  R   SG  I+  T QD
Sbjct: 431 VLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQD 480

 Score = 28.5 bits (62), Expect = 0.002
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 1183 INMLKLMHPEISEALSKNNKLTKKQQRIYKKYISGKYINATTQKDTNTLHNTAKQRKKQ 1241
            IN++K    E+SE + K  K+T+K++   K   +GK      Q  T    + AK+R++Q
Sbjct: 488  INVMKQSGCEVSEWMDKMAKMTRKEKESIK---NGKAHKERKQITTVPKMDKAKRRRQQ 543

 Score = 19.6 bits (39), Expect = 0.80
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 844 DTTEIQNNE--HYEESNIENVNANYDYSKNKLI 874
           D + I  N+  H E++N   +    D+ +NK I
Sbjct: 25  DYSVINGNDENHKEDNNESQIVKELDFFRNKRI 57

 Score = 18.1 bits (35), Expect = 2.3
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 630 VYYGDDKNKRDKSYTCSHKNNTNDIVYMGCVPHLNDYIEYIEDLKKRDTELMSLNK 685
           V  G+D+N ++        NN + IV           I  +ED +++ TE  S NK
Sbjct: 28  VINGNDENHKED-------NNESQIVKELDFFRNKRIISKVEDDREKTTENDSPNK 76

 Score = 17.3 bits (33), Expect = 4.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 674 KKRDTELMSLNKSILASYK 692
           KKR  ++  L+KS+ A  K
Sbjct: 223 KKRPLQVALLSKSLGAKLK 241

 Score = 16.2 bits (30), Expect = 8.9
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 628 DKVYYGDDKNKRDKS 642
           +K    D  NK +KS
Sbjct: 66  EKTTENDSPNKEEKS 80

Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1213
Number of extensions: 45
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 1289
Length of database: 564
Length adjustment: 42
Effective length of query: 1247
Effective length of database: 522
Effective search space:   650934
Effective search space used:   650934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)