>YMR290C HAS1 SGDID:S000004903, Chr XIII from 851590-850073, reverse
           complement, Verified ORF, "ATP-dependent RNA helicase;
           localizes to both the nuclear periphery and nucleolus;
           highly enriched in nuclear pore complex fractions;
           constituent of 66S pre-ribosomal particles"
          Length = 505

 Score =  133 bits (334), Expect = 4e-35
 Identities = 104/358 (29%), Positives = 180/358 (50%), Gaps = 17/358 (4%)

Query: 161 FQQLGLSENMCRSIASNLKYNKPTNIQKLCITKILHRRDVICISKTGSGKSLVYLCTLID 220
           F++L LS+   ++I   + +   T++Q   I  +L  RDV+  +KTGSGK+L +L   I+
Sbjct: 44  FEELKLSQPTLKAI-EKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 102

Query: 221 ILK--EHNKYYGIRGLIILPTKELVIQIYKLCKKICKNYFHLXXXXXXXXXXXXKQ-FDI 277
           +L   +     G   ++I PT+EL +QI+ + +++ +  FH             +Q  + 
Sbjct: 103 LLHSLKFKPRNGTGIIVITPTRELALQIFGVARELME--FHSQTFGIVIGGANRRQEAEK 160

Query: 278 LNQNLDILLCTPGRLSFLLQETK-LSLEKVEILIIDEADRLLELNYYNDMNVIYKSLNNT 336
           L + +++L+ TPGRL   LQ TK    + ++ LIIDEADR+LE+ + ++M  I K L N 
Sbjct: 161 LMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNE 220

Query: 337 SKQTILVSATLPTNVENYFKLKLNNPDVLFLT----SDNTINEKVHLHFLFCRSYEXXXX 392
            +Q++L SAT  T VE+  ++ L  P  LF+     +DN+  + +   ++ C S +    
Sbjct: 221 DRQSMLFSATQTTKVEDLARISL-RPGPLFINVVPETDNSTADGLEQGYVVCDS-DKRFL 278

Query: 393 XXXXXXXXXXXXXXXXXXXXCTKYHILFFSNILKHFKIHHSILYGNSDTSFRFEQINNFT 452
                               C    + +++ +L +  +    L+G      R      F 
Sbjct: 279 LLFSFLKRNQKKKIIVFLSSCNS--VKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFC 336

Query: 453 KNEHIQFLLVTDVASRGINITSVQNVINYNLPFSPKLFIHRIGRACRTDISGYGISLL 510
             E    L+ TDVA+RG++I +V  +I ++ P  P+ +IHR+GR  R    G G SL+
Sbjct: 337 NAER-GILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR-GTKGKGKSLM 392

 Score = 18.1 bits (35), Expect = 2.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 195 LHRRDVICISKTGSGKSLVYL 215
           +HR         G GKSL++L
Sbjct: 374 IHRVGRTARGTKGKGKSLMFL 394

Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 973
Number of extensions: 51
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 1289
Length of database: 505
Length adjustment: 41
Effective length of query: 1248
Effective length of database: 464
Effective search space:   579072
Effective search space used:   579072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)