>YER165W PAB1 SGDID:S000000967, Chr V from 510368-512101, Verified
           ORF, "Poly(A) binding protein, part of the 3'-end
           RNA-processing complex, mediates interactions between
           the 5' cap structure and the 3' mRNA poly(A) tail,
           involved in control of poly(A) tail length, interacts
           with translation factor eIF-4G"
          Length = 577

 Score = 70.1 bits (170), Expect = 1e-16
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 40/223 (17%)

Query: 7   SKIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEA 66
           + +++ +I  + T+E+ +   AK+G I             +G+ F+ YE+  +A KA+EA
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278

Query: 67  LDYKCIFPNSQRPLDVRFASYKYNNSNDAQGGNKNVWQKHVTTDGHPYYYNSVTGHSQWE 126
           L+   +  N ++    R           AQ  N+ +   HV    +  Y        + E
Sbjct: 279 LNDSEL--NGEKLYVGR-----------AQKKNERM---HVLKKQYEAY--------RLE 314

Query: 127 KPKEMSATNFPGKGSAPSFGPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDAN 186
           K  +                  G N+FV +L     D +L + F  +G + SA++ R  N
Sbjct: 315 KMAKYQ----------------GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN 358

Query: 187 GRNKGYGFVSFNNPESALNAIKGMHGFYVSGKHLKVQLKKGEE 229
           G++KG+GFV F+ PE A  AI   +   V+GK L V + + ++
Sbjct: 359 GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 401

 Score = 60.8 bits (146), Expect = 7e-14
 Identities = 59/276 (21%), Positives = 117/276 (42%), Gaps = 56/276 (20%)

Query: 5   NSSKIFIGSIPKDVTEEELKTEAAKYGTITQVYYV-PATAQSPRGWAFITYEQRSEAYKA 63
           +S+ +++G +   V+E  L    +  G+++ +     A  ++  G+A++ +       KA
Sbjct: 36  SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95

Query: 64  IEALDYKCIFPNSQRPLDVRFASYKYNNSNDA--QGGNKNVWQK--HVTTDGHPYY---- 115
           IE L+Y         P+  R     ++  + +  + G+ N++ K  H   D    Y    
Sbjct: 96  IEQLNYT--------PIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFS 147

Query: 116 -----YNSVTGHSQWEKPKEMSATNFPGKGSAPS---------------FGPPG------ 149
                 +S     +  K K     +F  +G+A                 +  P       
Sbjct: 148 VFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKER 207

Query: 150 -----------ANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFN 198
                       N++V ++ S  TD +  + F  FG +VSA +++DA+G+ KG+GFV++ 
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267

Query: 199 NPESALNAIKGMHGFYVSGKHLKV--QLKKGEEHYV 232
             E A+ A++ ++   ++G+ L V    KK E  +V
Sbjct: 268 KHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHV 303

 Score = 57.4 bits (137), Expect = 7e-13
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 31/160 (19%)

Query: 87  YKYNNSNDAQGGNKNVWQKHVTTDGHPYYYNSVTGHSQWEKPKEMSATNFPGKGSAPSFG 146
           Y Y N ND + G K + Q + T                   P +            PS  
Sbjct: 81  YAYVNFNDHEAGRKAIEQLNYT-------------------PIKGRLCRIMWSQRDPSLR 121

Query: 147 PPGA-NVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALN 205
             G+ N+F+ +L     +  LY  F  FG ++S++I  D NG++KG+GFV F    +A  
Sbjct: 122 KKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKE 181

Query: 206 AIKGMHGFYVSGKHLKV-----------QLKKGEEHYVQM 234
           AI  ++G  ++G+ + V           QL++ + HY  +
Sbjct: 182 AIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNL 221

 Score = 33.1 bits (74), Expect = 1e-05
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 18/137 (13%)

Query: 9   IFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEALD 68
           +F+ ++   V +E+L+ E A YGTIT    +       +G+ F+ +    EA KAI   +
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383

Query: 69  YKCIFPNSQRPLDVRFASYKYNNSNDAQGGNKNVWQKHVTTDGHPYYYNSVTGHSQWEKP 128
            + +   + +PL V  A  K           ++   + +       Y  +    +     
Sbjct: 384 QQIV---AGKPLYVAIAQRK--------DVRRSQLAQQIQARNQMRYQQATAAAAA---- 428

Query: 129 KEMSATNFPGKGSAPSF 145
              +A   PG+   P F
Sbjct: 429 ---AAAGMPGQFMPPMF 442

 Score = 13.9 bits (24), Expect = 9.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 20  EEELKTEAA 28
           E+E +TE A
Sbjct: 569 EQEQQTEQA 577

Lambda     K      H
   0.316    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 456
Number of extensions: 26
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 286
Length of database: 577
Length adjustment: 31
Effective length of query: 255
Effective length of database: 546
Effective search space:   139230
Effective search space used:   139230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)