>YLL034C RIX7 SGDID:S000003957, Chr XII from 73145-70632, reverse
           complement, Verified ORF, "Putative ATPase of the AAA
           family, required for export of pre-ribosomal large
           subunits from the nucleus; distributed between the
           nucleolus, nucleoplasm, and nuclear periphery depending
           on growth conditions"
          Length = 837

 Score =  224 bits (571), Expect = 2e-62
 Identities = 112/258 (43%), Positives = 172/258 (66%), Gaps = 5/258 (1%)

Query: 644 IEINNDIIFEGVNNIKKKMTNENICEVPNINLDNIGSXXXXXXXXXXXXXXPVKYSNIYK 703
           + I  +   + +  I+     E    VP++   N+G+              P+K   +Y+
Sbjct: 501 LSIKYEDFLKALPTIQPTAKREGFATVPDVTWANVGALQRVRLELNMAIVQPIKRPELYE 560

Query: 704 HLGINKSMGILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEILNKYVGESEKKVREIFS 763
            +GI+   G+LL+GPPGCGKT+LAKA++NE +ANFI+IKGPE+LNKYVGESE+ +R++F+
Sbjct: 561 KVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFT 620

Query: 764 YASVYKPCLIFFDEIDSICINRSNNKSVSASDRVVNQLLSEMDGLSQREGVYIIATTNRP 823
            A    PC+IFFDE+D++   R  + S S+S RVVN LL+E+DGL+ R G+++I  TNRP
Sbjct: 621 RARASVPCVIFFDELDALVPRRDTSLSESSS-RVVNTLLTELDGLNDRRGIFVIGATNRP 679

Query: 824 DIIDKALLRSGRFDQLIYISLPKYQGRVDILKKLSKN--MPIDKNVRFEEI--SKLTRGY 879
           D+ID A+LR GR D+ ++I LP  + ++DI+K L+K+   P+  +V FEEI  ++    +
Sbjct: 680 DMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNF 739

Query: 880 SGADLYGVLRESAFIALQ 897
           SGADL  ++RES+ +AL+
Sbjct: 740 SGADLAALVRESSVLALK 757

 Score =  179 bits (453), Expect = 1e-48
 Identities = 109/325 (33%), Positives = 170/325 (52%), Gaps = 21/325 (6%)

Query: 581 NDENQIASTEIPQELSNDSPCLNNQNNHNLKEI----NHKRKYNMLLCSLNEEKVIEGKA 636
           N+E +  S E  +EL+  +  +    N   K I    +     +  +   ++ K  E K 
Sbjct: 119 NEEEEKPSLE--EELAKKNMMIERDTNEMNKRITSTWSKSGSVSESITETDDPKTEEVKK 176

Query: 637 EKKIQKTIEINNDIIFEGVNNIKKKMTNENICEVPNINLDNIGSXXXXXXXXXXXXXXPV 696
            KK  K          EG   +K++   E+    PN +L ++G               P+
Sbjct: 177 SKKRSK----------EGTCKVKRQKIKEDRSP-PNSSLKSLGGMDDVVAQLMELIGLPI 225

Query: 697 KYSNIYKHLGINKSMGILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEILNKYVGESEK 756
            +  I+   G+    G+LL+GPPGCGKT +A A++ E++  FI+I  P +++   GESEK
Sbjct: 226 LHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEK 285

Query: 757 KVREIFSYASVYKPCLIFFDEIDSICINRSNNKSVSASDRVVNQLLSEMDGLSQR----E 812
           K+R++F  A    PCL+FFDEID+I   R          R+V QLL+ MD L+      +
Sbjct: 286 KIRDLFDEARSLAPCLVFFDEIDAITPKRDGGAQREMERRIVAQLLTSMDELTMEKTNGK 345

Query: 813 GVYIIATTNRPDIIDKALLRSGRFDQLIYISLPKYQGRVDILKKLSKNMPIDKNVRFEEI 872
            V II  TNRPD +D AL R+GRFD+ I +++P    R+ ILKK+S N+ ID  + F ++
Sbjct: 346 PVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKL 405

Query: 873 SKLTRGYSGADLYGVLRESAFIALQ 897
           +KLT G+ GADL  ++  +   A++
Sbjct: 406 AKLTPGFVGADLKALVTAAGTCAIK 430

 Score = 37.4 bits (85), Expect = 5e-06
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 289 IFGTSGTGKTTLSYAIAGECGCPFFYIKLPEYIKYISNDNKNNKLRILFEHIKN 342
           + G  G GKT+++ A+AGE   PF  I  P  +  +S +++  K+R LF+  ++
Sbjct: 244 LHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESE-KKIRDLFDEARS 296

 Score = 31.2 bits (69), Expect = 4e-04
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 289 IFGTSGTGKTTLSYAIAGECGCPFFYIKLPEYI-KYISNDNKN 330
           ++G  G GKT L+ A+A E    F  IK PE + KY+    ++
Sbjct: 572 LWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERS 614

 Score = 20.0 bits (40), Expect = 0.88
 Identities = 8/45 (17%), Positives = 21/45 (46%)

Query: 995  DDNTKPYILDDSVDNNRVLSKGQNNINQMDQINLDEIVKISENFT 1039
            ++  KP + ++    N ++ +  N +N+       +   +SE+ T
Sbjct: 120  EEEEKPSLEEELAKKNMMIERDTNEMNKRITSTWSKSGSVSESIT 164

 Score = 17.7 bits (34), Expect = 4.4
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 544 TKSDNDFFKNVTNYEEIKQNDQLTSHEQNILITSIKTND-----ENQIASTEIPQELSND 598
           TKS      +  ++EEI +N++  +     L   ++ +           S EI   L ND
Sbjct: 714 TKSHGTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKRKFFQSEEIQSVLDND 773

 Score = 16.9 bits (32), Expect = 7.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 785 RSNNKSVSASDRVVNQLLSEMDGLSQ 810
           R    SVS  DR+    L++  GL++
Sbjct: 802 RKIKPSVSDKDRLKYDRLNKKMGLTE 827

 Score = 16.5 bits (31), Expect = 9.7
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 651 IFEGVNNIKKKMTNENICEVPNINLD 676
           IF+   NIK   T        N+ +D
Sbjct: 432 IFQTYANIKSTPTTATDSSEDNMEID 457

 Score = 16.5 bits (31), Expect = 9.7
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 118 ISNDITTCDIIEGDNCRS 135
           +S+D+   +II  + C +
Sbjct: 721 LSSDVDFEEIIRNEKCNN 738

Lambda     K      H
   0.317    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1811
Number of extensions: 66
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 1224
Length of database: 837
Length adjustment: 45
Effective length of query: 1179
Effective length of database: 792
Effective search space:   933768
Effective search space used:   933768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.1 bits)
S2: 31 (16.5 bits)