Query= PF07_0012 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(1540 letters)
>YAR003W SWD1 SGDID:S000000064, Chr I from 155007-156287, Verified
ORF, "Subunit of the COMPASS (Set1C) complex, which
methylates histone H3 on lysine 4 and is required in
transcriptional silencing near telomeres; WD40 beta
propeller superfamily member with similarity to mammalian
Rbbp7"
Length = 426
Score = 48.5 bits (114), Expect = 1e-09
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
Query: 1221 NNVNMLDSNYNVDTIINNKSDHKDKRRRYMFSSIDEIRSYH-TIHNPIQKEINEL---CC 1276
+N+ L + N + + N SD R+Y S DE + T+ + Q IN+L C
Sbjct: 215 SNIKHLIVSQNGERLAINCSDRTI--RQYEISIDDENSAVELTLEHKYQDVINKLQWNCI 272
Query: 1277 FSDDIYQSYLLVITLRSGVHTLYIYNLKNIDLQNAVKVNISAYKGFKQIKWTKCYDMLIS 1336
+ YL+ T S H LYI+ + L V+V A + I W ++S
Sbjct: 273 LFSNNTAEYLVASTHGSSAHELYIWETTSGTL---VRVLEGAEEELIDINWDFYSMSIVS 329
Query: 1337 LSNVGNNILVLKNKHLNNWSFFISDFELIDSNIEVIEDDNEFDIIENIQ 1385
N+ V WS DFE ++ N++ +E ++EFD ++ +
Sbjct: 330 NGFESGNVYVWSVVIPPKWSALAPDFEEVEENVDYLEKEDEFDEVDEAE 378
Score = 19.6 bits (39), Expect = 0.71
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 681 ISIDQMNGIIQDNVKEKYLHV----KKNTVLYS 709
ISID N ++ ++ KY V + N +L+S
Sbjct: 243 ISIDDENSAVELTLEHKYQDVINKLQWNCILFS 275
Score = 19.2 bits (38), Expect = 0.93
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 505 ETYKKDSFNMMEGKEKSHLDIFKNYYNL 532
ET ++EG E+ +DI ++Y++
Sbjct: 298 ETTSGTLVRVLEGAEEELIDINWDFYSM 325
Score = 18.9 bits (37), Expect = 1.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 1261 HTIHNPIQKE 1270
HTI NP++ E
Sbjct: 21 HTIENPLRTE 30
Score = 18.9 bits (37), Expect = 1.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 615 CNINSFEEKTIYIID 629
C FEE Y+ID
Sbjct: 130 CVATIFEESDAYVID 144
Score = 16.9 bits (32), Expect = 4.6
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 892 QKENDASEIDE 902
+KE++ E+DE
Sbjct: 366 EKEDEFDEVDE 376
Score = 16.5 bits (31), Expect = 6.0
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 618 NSFEEKTIYIIDMIL 632
N FE +Y+ +++
Sbjct: 330 NGFESGNVYVWSVVI 344
Score = 16.2 bits (30), Expect = 7.9
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1477 FVNIKEHVESYMNT 1490
F +KEH E +T
Sbjct: 9 FAVLKEHPEKLTHT 22
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1327
Number of extensions: 73
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 1540
Length of database: 426
Length adjustment: 41
Effective length of query: 1499
Effective length of database: 385
Effective search space: 577115
Effective search space used: 577115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)