Query= PF07_0027 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) DNA-directed
RNA polymerase 2 8.2 kDa polypeptide, putative
(69 letters)
>FBgn0039218 type=protein;
loc=3R:join(20543340..20543434,20543518..20543626);
ID=FBpp0084067; name=Rpb10-PA;
parent=FBgn0039218,FBtr0084688;
dbxref=FlyBase:FBpp0084067,
FlyBase_Annotation_IDs:CG13628-PA,
GB_protein:AAF56326.1,GB_protein:AAF56326;
MD5=2ea40e848bad6fcb6b4652db5ef41bb9; release=r5.1;
species=Dmel; length=67;
Length = 67
Score = 81.3 bits (199), Expect = 1e-21
Identities = 37/67 (55%), Positives = 48/67 (71%)
Query: 1 MIIPVRCFTCGKLIGNLWSVYEKKLEEGLSKCDALNELNLYRYCCRRMILTHADMMDKLL 60
MIIP+RCFTCGK+IGN W Y L+ ++ DAL+ L L RYCCRRM+L H D+++KLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 CYNIYER 67
Y E+
Sbjct: 61 NYAPLEK 67
Lambda K H
0.330 0.144 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 69
Length of database: 67
Length adjustment: 6
Effective length of query: 63
Effective length of database: 61
Effective search space: 3843
Effective search space used: 3843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 11 ( 5.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 11 ( 8.0 bits)
S2: 11 ( 8.8 bits)