Query= PF07_0027 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) DNA-directed
RNA polymerase 2 8.2 kDa polypeptide, putative
(69 letters)
>YOR210W RPB10 SGDID:S000005736, Chr XV from 738321-738533,
Verified ORF, "RNA polymerase subunit ABC10-beta,
common to RNA polymerases I, II, and III"
Length = 70
Score = 81.3 bits (199), Expect = 1e-21
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 1 MIIPVRCFTCGKLIGNLWSVYEKKLEEG-LSKCDALNELNLYRYCCRRMILTHADMMDKL 59
MI+PVRCF+CGK++G+ W Y L+E L + AL+ L L RYCCRRMILTH D+++K
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LCYNIYERK 68
L YN E++
Sbjct: 61 LRYNPLEKR 69
Lambda K H
0.330 0.144 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 69
Length of database: 70
Length adjustment: 6
Effective length of query: 63
Effective length of database: 64
Effective search space: 4032
Effective search space used: 4032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 11 ( 5.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 11 ( 8.0 bits)
S2: 11 ( 8.8 bits)