>YGR085C RPL11B SGDID:S000003317, Chr VII from 648911-648387,
           reverse complement, Verified ORF, "Protein component of
           the large (60S) ribosomal subunit, nearly identical to
           Rpl11Ap; involved in ribosomal assembly; depletion
           causes degradation of proteins and RNA of the 60S
           subunit; has similarity to E. coli L5 and rat L11"
          Length = 174

 Score =  206 bits (525), Expect = 1e-58
 Identities = 103/172 (59%), Positives = 124/172 (72%)

Query: 1   MENKEQNVMREIKVNKLVLNICVGESGDRLTRAARVLEQLTEQKPIFGKCRFTIRSFGVR 60
           M  K QN MR++K+ KLVLNI VGESGDRLTRA++VLEQL+ Q P+  K R+T+R+FG+R
Sbjct: 1   MSTKAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIR 60

Query: 61  RNEKISCFVTVRGKKALEILEKGLKVKEYELRRKNFSDTGNFGFGIQEHIDLGIKYDPST 120
           RNEKI+  VTVRG KA EILE+GLKVKEY+LR +NFS TGNFGFGI EHIDLGIKYDPS 
Sbjct: 61  RNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSI 120

Query: 121 GIYGMDFYVHLXXXXXXXXXXXXXXXXXXXXXXVTKEDAMKWFQTKFDGILL 172
           GI+GMDFYV +                       TKED + WF+ K+D  +L
Sbjct: 121 GIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVL 172

Lambda     K      H
   0.323    0.141    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 140
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 174
Length adjustment: 19
Effective length of query: 154
Effective length of database: 155
Effective search space:    23870
Effective search space used:    23870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 18 (11.2 bits)
S2: 18 (11.5 bits)