Query= PF07_0079 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 60S ribosomal
protein L11a, putative
(173 letters)
>YPR102C RPL11A SGDID:S000006306, Chr XVI from 731746-731222,
reverse complement, Verified ORF, "Protein component of
the large (60S) ribosomal subunit, nearly identical to
Rpl11Bp; involved in ribosomal assembly; depletion
causes degradation of proteins and RNA of the 60S
subunit; has similarity to E. coli L5 and rat L11"
Length = 174
Score = 206 bits (523), Expect = 2e-58
Identities = 103/172 (59%), Positives = 124/172 (72%)
Query: 1 MENKEQNVMREIKVNKLVLNICVGESGDRLTRAARVLEQLTEQKPIFGKCRFTIRSFGVR 60
M K QN MR++K+ KLVLNI VGESGDRLTRA++VLEQL+ Q P+ K R+T+R+FG+R
Sbjct: 1 MSAKAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIR 60
Query: 61 RNEKISCFVTVRGKKALEILEKGLKVKEYELRRKNFSDTGNFGFGIQEHIDLGIKYDPST 120
RNEKI+ VTVRG KA EILE+GLKVKEY+LR +NFS TGNFGFGI EHIDLGIKYDPS
Sbjct: 61 RNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSI 120
Query: 121 GIYGMDFYVHLXXXXXXXXXXXXXXXXXXXXXXVTKEDAMKWFQTKFDGILL 172
GI+GMDFYV + TKED + WF+ K+D +L
Sbjct: 121 GIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVL 172
Lambda K H
0.323 0.141 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 139
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 174
Length adjustment: 19
Effective length of query: 154
Effective length of database: 155
Effective search space: 23870
Effective search space used: 23870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 18 (11.2 bits)
S2: 18 (11.5 bits)