Query= PF07_0098 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) dynactin 4,
putative
(226 letters)
>YDL055C PSA1 SGDID:S000002213, Chr IV from 356759-355674, reverse
complement, Verified ORF, "GDP-mannose pyrophosphorylase
(mannose-1-phosphate guanyltransferase), synthesizes
GDP-mannose from GTP and mannose-1-phosphate in cell
wall biosynthesis; required for normal cell wall
structure"
Length = 361
Score = 32.0 bits (71), Expect = 2e-05
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 136 IGNNCIIKATYIGNNVYIGN------NTIIGERVIIKDNVIIKQNTVIPNDTI 182
I N+ ++K+T +G N +G T++G+ V +KD + I V+P+ +I
Sbjct: 298 IKNHSLVKSTIVGWNSTVGQWCRLEGVTVLGDDVEVKDEIYINGGKVLPHKSI 350
Score = 31.2 bits (69), Expect = 3e-05
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 136 IGNNCIIKATYIGNNVYIGNNTIIGERVIIKDNVIIKQNTVIPNDTI 182
+GN I I + IG + +IG V I D V I ++ V+ N TI
Sbjct: 252 VGNALIDPTAKISSTAKIGPDVVIGPNVTIGDGVRITRSVVLCNSTI 298
Score = 26.9 bits (58), Expect = 5e-04
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 113 NKMENHKPDASSYITITIGNYVYIGNNCIIKATYIGNNVYIGNNTIIGERVIIKDNVIIK 172
N + +P + +GN + I IG +V IG N IG+ V I +V++
Sbjct: 235 NSLAKRQPKKLATGANIVGNALIDPTAKISSTAKIGPDVVIGPNVTIGDGVRITRSVVLC 294
Query: 173 QNTV 176
+T+
Sbjct: 295 NSTI 298
Score = 15.0 bits (27), Expect = 2.0
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 128 ITIGNYVYIGNNCIIKATYIGNNV 151
+ + + +YI ++ I +NV
Sbjct: 331 VEVKDEIYINGGKVLPHKSISDNV 354
Lambda K H
0.320 0.141 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 218
Number of extensions: 17
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 4
Length of query: 226
Length of database: 361
Length adjustment: 26
Effective length of query: 200
Effective length of database: 335
Effective search space: 67000
Effective search space used: 67000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 22 (13.0 bits)
S2: 22 (13.1 bits)