Query= PF07_0098 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) dynactin 4,
putative
(226 letters)
>YDR211W GCD6 SGDID:S000002619, Chr IV from 884723-886861, Verified
ORF, "Catalytic epsilon subunit of the translation
initiation factor eIF2B, the guanine-nucleotide exchange
factor for eIF2; activity subsequently regulated by
phosphorylated eIF2; first identified as a negative
regulator of GCN4 expression"
Length = 712
Score = 35.4 bits (80), Expect = 3e-06
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 13/122 (10%)
Query: 65 KSIIKNKAILRGDLNSLYIGKYVIIGCGTLICPCFTNKINIPNEIFDNNKM--ENHKPDA 122
+ I K K ++ S IGK IG GT I I N + N EN +
Sbjct: 323 RHIYKEKDVVLAQ--SCKIGKCTAIGSGTKI----GEGTKIENSVIGRNCQIGENIRIKN 376
Query: 123 SSYITITIGNYVYIGNNCIIKATYIGNNVYIGNNTIIGERVIIKDNVIIKQNTVIPNDTI 182
S I + IGNN II + I +N +G+N + + II NV I N + +T
Sbjct: 377 SF-----IWDDCIIGNNSIIDHSLIASNATLGSNVRLNDGCIIGFNVKIDDNMDLDRNTK 431
Query: 183 IS 184
IS
Sbjct: 432 IS 433
Score = 16.9 bits (32), Expect = 1.1
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 94 LICPCFTNKINIPNEIFDNNK 114
LIC N+I N+ +N+K
Sbjct: 77 LICSSHANQI---NDYIENSK 94
Lambda K H
0.320 0.141 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 411
Number of extensions: 20
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 712
Length adjustment: 31
Effective length of query: 195
Effective length of database: 681
Effective search space: 132795
Effective search space used: 132795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)