Query= PF07_0098 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) dynactin 4, putative (226 letters)
>YDR211W GCD6 SGDID:S000002619, Chr IV from 884723-886861, Verified
           ORF, "Catalytic epsilon subunit of the translation
           initiation factor eIF2B, the guanine-nucleotide exchange
           factor for eIF2; activity subsequently regulated by
           phosphorylated eIF2; first identified as a negative
           regulator of GCN4 expression"
          Length = 712

 Score = 35.4 bits (80), Expect = 3e-06
 Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 65  KSIIKNKAILRGDLNSLYIGKYVIIGCGTLICPCFTNKINIPNEIFDNNKM--ENHKPDA 122
           + I K K ++     S  IGK   IG GT I         I N +   N    EN +   
Sbjct: 323 RHIYKEKDVVLAQ--SCKIGKCTAIGSGTKI----GEGTKIENSVIGRNCQIGENIRIKN 376

Query: 123 SSYITITIGNYVYIGNNCIIKATYIGNNVYIGNNTIIGERVIIKDNVIIKQNTVIPNDTI 182
           S      I +   IGNN II  + I +N  +G+N  + +  II  NV I  N  +  +T 
Sbjct: 377 SF-----IWDDCIIGNNSIIDHSLIASNATLGSNVRLNDGCIIGFNVKIDDNMDLDRNTK 431

Query: 183 IS 184
           IS
Sbjct: 432 IS 433

 Score = 16.9 bits (32), Expect = 1.1
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)

Query: 94  LICPCFTNKINIPNEIFDNNK 114
           LIC    N+I   N+  +N+K
Sbjct: 77  LICSSHANQI---NDYIENSK 94
Lambda     K      H
   0.320    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 411
Number of extensions: 20
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 712
Length adjustment: 31
Effective length of query: 195
Effective length of database: 681
Effective search space:   132795
Effective search space used:   132795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)