Query= PF07_0112 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) proteasome
subunit alpha type 5, putative
(256 letters)
>YGR253C PUP2 SGDID:S000003485, Chr VII from 999145-998363, reverse
complement, Verified ORF, "Alpha subunit of the 20S
proteasome involved in ubiquitin-dependent catabolism;
human homolog is subunit zeta"
Length = 260
Score = 234 bits (597), Expect = 1e-66
Identities = 124/245 (50%), Positives = 172/245 (70%), Gaps = 3/245 (1%)
Query: 1 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRISSTLIE 60
MF TRSEYDRGV+TFSPEGRLFQVEY+L AIKLGSTA+GI +GV+L E+R +S L+E
Sbjct: 1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 60
Query: 61 KDSVEKLLSIDDHIGCAMSGLMADARTLIDYARVECNHYKFIYNENINIKSCVELISELA 120
DS+EK++ ID HIGCAMSGL ADAR++I++AR + Y+E+IN++S + + +LA
Sbjct: 61 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 120
Query: 121 LDFSNLSDSKRKKIMSRPFGVALLIGGVD-KNGPCLWYTEPSGTNTRFSAASIGSAQEGA 179
L F S +++MSRPFGVALLI G D +G L++ EPSGT R++A +IGS EGA
Sbjct: 121 LRFGE-GASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGA 179
Query: 180 ELLLQENYKKDMTFEQAEILALTVLRQVMEDKLSTSNVEICAIKKSDQTFYKYNTDDISR 239
+ L + +T ++AE+L L +L+QVME+KL +N ++ I K D F Y+ + +
Sbjct: 180 QAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQD-GFKIYDNEKTAE 238
Query: 240 IIDVL 244
+I L
Sbjct: 239 LIKEL 243
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 190
Number of extensions: 10
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 260
Length adjustment: 24
Effective length of query: 232
Effective length of database: 236
Effective search space: 54752
Effective search space used: 54752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)