Query= PF07_0122 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein, conserved
(416 letters)
>YOL077C BRX1 SGDID:S000005437, Chr XV from 186723-185848, reverse
complement, Verified ORF, "Nucleolar protein,
constituent of 66S pre-ribosomal particles; depletion
leads to defects in rRNA processing and a block in the
assembly of large ribosomal subunits; possesses a
sigma(70)-like RNA-binding motif"
Length = 291
Score = 145 bits (366), Expect = 2e-39
Identities = 85/224 (37%), Positives = 127/224 (56%), Gaps = 7/224 (3%)
Query: 162 NRQRVLIVRSPLKKKGCKSFIDNLKLLLPHHKMENKWDKKVPKSELNDISYSRNCNNIIF 221
N+QR L++ S + I +L LLPH + E K D K +LN+I+ NCNN++F
Sbjct: 29 NKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYNCNNVLF 88
Query: 222 FDVKRKR-YCLWICKSITGPSLYFEILDYIPLHSLLFSGNCLLYSRPLLIFSKHFDELDH 280
F+ ++ + LW+ K GP++ F I + + L F+GNCL SRP+L F + F+ H
Sbjct: 89 FEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFESSPH 148
Query: 281 LKLIKEMFIHVFGVPNYHPLSKPFYDHCYNFFYVNDLIYFRHYQILPVTLADSNNVNKQQ 340
+LIKE+ +H F VP SKPF DH +F V+D I+ R Y+I T + ++
Sbjct: 149 YQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEISHSTKNKEEYEDGEE 208
Query: 341 ---LVEIGPQFTLHIIKIFEECFKGRILYENEKYQNYVTPQQVK 381
LVEIGP+F + +I I E F G +YEN++ YV+P V+
Sbjct: 209 DISLVEIGPRFVMTVILILEGSFGGPKIYENKQ---YVSPNVVR 249
Lambda K H
0.322 0.141 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 272
Number of extensions: 9
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 291
Length adjustment: 29
Effective length of query: 387
Effective length of database: 262
Effective search space: 101394
Effective search space used: 101394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.5 bits)
S2: 23 (13.5 bits)