Query= PF08_0019 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) guanine
nucleotide-binding protein, putative
(323 letters)
>YMR116C ASC1 SGDID:S000004722, Chr XIII from
500687-500151,499877-499455, reverse complement,
Verified ORF, "WD repeat protein (G-beta like protein)
involved in translation regulation; required for
repression of Gcn4p activity in the absence of
amino-acid starvation; core component of the ribosome;
ortholog of mammalian RACK1"
Length = 319
Score = 252 bits (644), Expect = 7e-72
Identities = 135/314 (42%), Positives = 188/314 (59%), Gaps = 14/314 (4%)
Query: 12 LRGVLEGGHSDWVTSVSTPT-DPKLKTIVSASRDKKLIVWNINTDDDSGEIGTAKKSLTG 70
LRG LEG H+ WVTS++T P L ++SASRDK LI W + DD + G +S G
Sbjct: 9 LRGTLEG-HNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQ--KFGVPVRSFKG 63
Query: 71 HSQAINDVSISSDGLFALSGSWDHSVRLWDLSLGETIRSFIGHTSDVFSVSFSPDNRQIV 130
HS + D ++++DG +ALS SWD ++RLWD++ GET + F+GH SDV SV I+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 131 SASRDKTIKLWNTLAQCKYTITDQQHTDWITCVRFSPS----PNQAIIVSCGWDKLVKVW 186
S SRDKTIK+W QC T+ H DW++ VR P+ + I+S G DK+VK W
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLLG--HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 187 NLKNCDLNKNLEGHTGVLNTVTISPDGSLCASGGKDGVAKLWDVKEGKHLYSLETGSTIN 246
NL + + GH +NT+T SPDG+L AS GKDG LW++ K +Y+L +
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 247 SLCFSPCDYWLCAATDRFIRIWNLESKLIISEIYP--VKQSKIGVPWCTSLTWSANGQLL 304
SL FSP YWL AAT I++++L+ + ++ ++ P SK P SL WSA+GQ L
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 305 YCGSTDGNIYVYEV 318
+ G TD I V++V
Sbjct: 302 FAGYTDNVIRVWQV 315
Lambda K H
0.316 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 459
Number of extensions: 35
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 319
Length adjustment: 28
Effective length of query: 295
Effective length of database: 291
Effective search space: 85845
Effective search space used: 85845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 22 (13.0 bits)
S2: 22 (13.1 bits)