>YGL112C TAF6 SGDID:S000003080, Chr VII from 299731-298181, reverse
           complement, Verified ORF, "Subunit (60 kDa) of TFIID and
           SAGA complexes, involved in transcription initiation of
           RNA polymerase II and in chromatin modification, similar
           to histone H4"
          Length = 516

 Score = 34.7 bits (78), Expect = 2e-05
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 180 NDTCFKKISDIIELRITQIIEEANKFYEKRKRYTINKYLSIEDLTNCCNYLNVVIPYKY 238
           ND   K ++  +E RI +IIE+A KF    KR++    L+ +D++     LNV   Y Y
Sbjct: 30  NDDVLKALAMDVEYRILEIIEQAVKF----KRHSKRDVLTTDDVSKALRVLNVEPLYGY 84

 Score = 20.8 bits (42), Expect = 0.32
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 262 LISKKEYPDYLKKRHSRKTYEKRKKKL 288
           L+ KK+ PD  + +  + T E ++K L
Sbjct: 462 LVLKKDLPDLYEGKGEKVTDEDKEKLL 488

 Score = 16.5 bits (31), Expect = 6.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 573 IIENDQLND 581
           II+N  LND
Sbjct: 148 IIQNPNLND 156

Lambda     K      H
   0.319    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 980
Number of extensions: 38
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 1276
Length of database: 516
Length adjustment: 41
Effective length of query: 1235
Effective length of database: 475
Effective search space:   586625
Effective search space used:   586625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.7 bits)
S2: 30 (16.2 bits)