Query= PF08_0038 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(568 letters)
>YJL115W ASF1 SGDID:S000003651, Chr X from 196207-197046, Verified
ORF, "Nucleosome assembly factor, involved in chromatin
assembly after DNA replication, anti-silencing protein
that causes derepression of silent loci when
overexpressed"
Length = 279
Score = 35.0 bits (79), Expect = 4e-06
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 490 DDDPHEDNDYEEHFHMLDEILNDDEDLPTISSLSSLQGLEKDDNVQSEEHYEDDIYNDEG 549
DD+ ED+D E+ +E ++E+ + + +DN + E E+DI N +G
Sbjct: 185 DDEDDEDDDQEDGEGEAEEAAEEEEE----------EEEKTEDNETNLEEEEEDIENSDG 234
Query: 550 VNDINEDELGNIN 562
+ E+E+G+++
Sbjct: 235 DEEEGEEEVGSVD 247
Score = 21.6 bits (44), Expect = 0.043
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 531 DDNVQSEEHYEDDIYNDEGVNDINEDE 557
DD + ++ EDD +DE D ++++
Sbjct: 170 DDEEEEDDEEEDDDEDDEDDEDDDQED 196
Score = 20.4 bits (41), Expect = 0.096
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 529 EKDDNVQSEEHYEDDIYNDEG 549
E+DD+ E+ +DD + EG
Sbjct: 179 EEDDDEDDEDDEDDDQEDGEG 199
Score = 19.6 bits (39), Expect = 0.16
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 531 DDNVQSEEHYEDDIYNDEGVNDINEDELG 559
D+ + +E +DD +++ +D ED G
Sbjct: 171 DEEEEDDEEEDDDEDDEDDEDDDQEDGEG 199
Score = 18.1 bits (35), Expect = 0.48
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 533 NVQSEEHYEDDIYNDE--GVNDINEDE 557
N+ + E D+Y E GV+D E++
Sbjct: 150 NIVWDNENEGDLYPPEQPGVDDEEEED 176
Score = 17.3 bits (33), Expect = 0.81
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 436 ETLKKRIQEWKWSSDIKGALKVKKHDPYKNFILTKFQCNDPVPEYIKYEYLFNVD 490
E L+ + +W G+ + HD + IL PVP + +++F+ D
Sbjct: 29 ECLESLKHDLEWKLTYVGSSRSLDHDQELDSILV-----GPVPVGVN-KFVFSAD 77
Score = 16.2 bits (30), Expect = 1.8
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 140 DDEPIIRRPGCIIDIKTLLRN 160
D+E + P + + ++RN
Sbjct: 118 DEEELRENPPAKVQVDHIVRN 138
Score = 15.0 bits (27), Expect = 4.0
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 181 EADENDD 187
E DE+DD
Sbjct: 187 EDDEDDD 193
Lambda K H
0.319 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 552
Number of extensions: 49
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 8
Length of query: 568
Length of database: 279
Length adjustment: 31
Effective length of query: 537
Effective length of database: 248
Effective search space: 133176
Effective search space used: 133176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)