Query= PF08_0041 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) ribosome biogenesis protein nep1 homologue, putative (279 letters)
>YLR186W EMG1 SGDID:S000004176, Chr XII from 523634-524392, Verified
           ORF, "Protein required for the maturation of the 18S
           rRNA and for 40S ribosome production; associated with
           spindle/microtubules; nuclear localization depends on
           physical interaction with Nop14p; may bind snoRNAs"
          Length = 252

 Score =  133 bits (334), Expect = 4e-36
 Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 9/217 (4%)

Query: 67  KKVIIILEGACLQLIEVKRF-----IYELANSRKHKNILKKNKVDEENIKNFRPDILHQC 121
           K++I++L  A L+  ++         Y L N   H+ +LKK   D   I   RPDI HQC
Sbjct: 39  KRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRD---ISEARPDITHQC 95

Query: 122 LIHLLESPLNKFGYLQIYIKTHDNQLFYVSSNLKIPKTFQQFESLMVTFLRKYKIKANEK 181
           L+ LL+SP+NK G LQ+YI+T    L  V+  ++IP+TF++F  LMV  L K  I++   
Sbjct: 96  LLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNS 155

Query: 182 NIYLLKIIKNDLQNILPINGHKIGLSLKGKKVELNNYIKVYKNTNQPVTFFIGAVAYSNP 241
              LLK+IKN + + LP    K+ LS     + + +YI+   + ++ +  F+GA+A    
Sbjct: 156 EEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKL-DDDESICVFVGAMARGKD 214

Query: 242 TMKLQILDDNISISDFSLSAAMCCSSICSEFEHLWNL 278
               + +D+ + +S++ LSA++ CS  C   E  WN+
Sbjct: 215 NFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI 251
Lambda     K      H
   0.319    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 161
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 252
Length adjustment: 25
Effective length of query: 254
Effective length of database: 227
Effective search space:    57658
Effective search space used:    57658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)