Query= PF08_0041 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) ribosome
biogenesis protein nep1 homologue, putative
(279 letters)
>YLR186W EMG1 SGDID:S000004176, Chr XII from 523634-524392, Verified
ORF, "Protein required for the maturation of the 18S
rRNA and for 40S ribosome production; associated with
spindle/microtubules; nuclear localization depends on
physical interaction with Nop14p; may bind snoRNAs"
Length = 252
Score = 133 bits (334), Expect = 4e-36
Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 9/217 (4%)
Query: 67 KKVIIILEGACLQLIEVKRF-----IYELANSRKHKNILKKNKVDEENIKNFRPDILHQC 121
K++I++L A L+ ++ Y L N H+ +LKK D I RPDI HQC
Sbjct: 39 KRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRD---ISEARPDITHQC 95
Query: 122 LIHLLESPLNKFGYLQIYIKTHDNQLFYVSSNLKIPKTFQQFESLMVTFLRKYKIKANEK 181
L+ LL+SP+NK G LQ+YI+T L V+ ++IP+TF++F LMV L K I++
Sbjct: 96 LLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNS 155
Query: 182 NIYLLKIIKNDLQNILPINGHKIGLSLKGKKVELNNYIKVYKNTNQPVTFFIGAVAYSNP 241
LLK+IKN + + LP K+ LS + + +YI+ + ++ + F+GA+A
Sbjct: 156 EEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKL-DDDESICVFVGAMARGKD 214
Query: 242 TMKLQILDDNISISDFSLSAAMCCSSICSEFEHLWNL 278
+ +D+ + +S++ LSA++ CS C E WN+
Sbjct: 215 NFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI 251
Lambda K H
0.319 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 161
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 252
Length adjustment: 25
Effective length of query: 254
Effective length of database: 227
Effective search space: 57658
Effective search space used: 57658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)