>YMR131C RRB1 SGDID:S000004738, Chr XIII from 534697-533162, reverse
           complement, Verified ORF, "Essential nuclear protein
           involved in early steps of ribosome biogenesis;
           physically interacts with the ribosomal protein Rpl3p"
          Length = 511

 Score =  137 bits (344), Expect = 1e-36
 Identities = 94/276 (34%), Positives = 138/276 (50%), Gaps = 43/276 (15%)

Query: 233 KKPLHVFEKH-TTEGFSLDWNP-VHAAQLLTGDNNGNIYLWLPNNSGKWNYELLXXXXXX 290
           K+P+H  + H   EG+ LDW+P +    LL+GD +G IY +   ++ +W  +        
Sbjct: 262 KRPIHTVKNHGNVEGYGLDWSPLIKTGALLSGDCSGQIY-FTQRHTSRWVTDKQPFTVSN 320

Query: 291 XXXXXXXXXXXXXXXXXXCSIEDIQWCKKGNGLGNVFAMCSCDKSISILDIRNKNANSTN 350
                              SIEDIQW +  +    VFA   CD  I I D R+K     +
Sbjct: 321 NK-----------------SIEDIQWSRTES---TVFATAGCDGYIRIWDTRSKK----H 356

Query: 351 KNIHIENAHTNDVNVIAWNENTEFLLASGGDDNIIKVWDIRN--TNNA-----VAQLIFH 403
           K      A   DVNVI+W++   +LLASG D+    VWD+R    +NA     VAQ  FH
Sbjct: 357 KPAISVKASNTDVNVISWSDKIGYLLASGDDNGTWGVWDLRQFTPSNADAVQPVAQYDFH 416

Query: 404 KQPISSISWNFKDTYVLLASSLDNSISIWDLSVETESLEFTD--------SKYPDQLLFE 455
           K  I+SI++N  D  ++   S DN++++WDLSVE +  E            + P QLLF 
Sbjct: 417 KGAITSIAFNPLDESIVAVGSEDNTVTLWDLSVEADDEEIKQQAAETKELQEIPPQLLFV 476

Query: 456 HLNQKFITDAKFHPHYPGLVVSTSSENFNIFKPCNI 491
           H  QK + D K+H   PG +VST ++  N++K  ++
Sbjct: 477 HW-QKEVKDVKWHKQIPGCLVSTGTDGLNVWKTISV 511

 Score = 49.3 bits (116), Expect = 3e-10
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 17/87 (19%)

Query: 2   NEELEVDENAYDMLFSPLTPWPCLSFDYILEHPKHDALSEEEKKRRKENIDSGILNYPLE 61
           +E LE D   Y+ML +   PWPCL+ D I      D L  E +            NYP  
Sbjct: 108 DEVLEADPTVYEMLHNVNMPWPCLTLDVI-----PDTLGSERR------------NYPQS 150

Query: 62  VCCVAGTQANKRELNQIYVIKWSNLNK 88
           +     TQ+++++ N++ V+  SNL K
Sbjct: 151 ILLTTATQSSRKKENELMVLALSNLAK 177

 Score = 17.7 bits (34), Expect = 1.0
 Identities = 9/51 (17%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 30 ILEHPKHDALSEEEKKRRKENIDSGILNYPLEVCCVAGTQANKRELNQIYV 80
          I+E    D +++E+  R+K+     ++           ++ NK ++ ++Y+
Sbjct: 55 IIEIDGDDEINDEDDLRKKQEEAETLVQKD-------QSEGNKEKIQELYL 98

 Score = 15.4 bits (28), Expect = 5.1
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 380 GDDNIIKVWDIRNTNNAVAQLI 401
           GDD I    D+R        L+
Sbjct: 60  GDDEINDEDDLRKKQEEAETLV 81

 Score = 15.0 bits (27), Expect = 6.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 356 ENAHTNDVNVIAWNEN 371
           E    +DV+ +  NEN
Sbjct: 190 EEDDEDDVDPVIENEN 205

Lambda     K      H
   0.316    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 587
Number of extensions: 48
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 491
Length of database: 511
Length adjustment: 34
Effective length of query: 457
Effective length of database: 477
Effective search space:   217989
Effective search space used:   217989
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)