Query= PF08_0075 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 60S ribosomal
protein L13, putative
(215 letters)
>YDL082W RPL13A SGDID:S000002240, Chr IV from
308424-308427,308793-309388, Verified ORF, "Protein
component of the large (60S) ribosomal subunit, nearly
identical to Rpl13Bp; not essential for viability; has
similarity to rat L13 ribosomal protein"
Length = 199
Score = 86.3 bits (212), Expect = 4e-22
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 12 HLHKWWQRHVRVNFSKNIXXXXXXXXXXXXXXANGGTPIEKLHPIVHCPTQRYNFRTRLG 71
H K WQ V+V+F + P++ L P+V PT +YN + R G
Sbjct: 13 HFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLDLLRPVVRAPTVKYNRKVRAG 72
Query: 72 KGFTFEELKGAGLTPRAAQTIGICYDKRRKNRSEESLTKNVERLLKYKNSLVM 124
+GFT E+K AGLT A+TIGI D RR+NR++E NV+RL +Y++ +++
Sbjct: 73 RGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIV 125
Score = 15.8 bits (29), Expect = 0.61
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 197 RRKNRRQQ 204
RR+NR Q+
Sbjct: 100 RRQNRNQE 107
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 115
Number of extensions: 5
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 199
Length adjustment: 21
Effective length of query: 194
Effective length of database: 178
Effective search space: 34532
Effective search space used: 34532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.6 bits)
S2: 19 (11.9 bits)