Query= PF08_0076 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 40S ribosomal
protein S16, putative
(144 letters)
>YMR143W RPS16A SGDID:S000004751, Chr XIII from
551927-551950,552495-552902, Verified ORF, "Protein
component of the small (40S) ribosomal subunit;
identical to Rps16Bp and has similarity to E. coli S9
and rat S16 ribosomal proteins"
Length = 143
Score = 173 bits (438), Expect = 1e-48
Identities = 85/140 (60%), Positives = 102/140 (72%)
Query: 5 VKRVQTFGXXXXXXXXXXXXNGKGLIKLNGKNLDLVEPYILKTKVYEPLWLIGSGKLKNL 64
V VQTFG GKGLIK+NG + LVEP IL+ KVYEPL L+G K N+
Sbjct: 4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNI 63
Query: 65 DIRIRVKGGGQTSQIYAIRQAIGKGIISYYQKYVDESTKKELKDVLLRYDRSLLVGDTRR 124
DIR+RV GGG SQ+YAIRQAI KG+++Y+QKYVDE +K ELK YDR+LL+ D+RR
Sbjct: 64 DIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRR 123
Query: 125 CEPKKFGGKGARARYQKSYR 144
EPKKFGGKGAR+R+QKSYR
Sbjct: 124 PEPKKFGGKGARSRFQKSYR 143
Lambda K H
0.318 0.140 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 143
Length adjustment: 16
Effective length of query: 128
Effective length of database: 127
Effective search space: 16256
Effective search space used: 16256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 16 (10.2 bits)
S2: 16 (10.8 bits)