Query= PF08_0087 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) importin
alpha, putative
(545 letters)
>YNL189W SRP1 SGDID:S000005133, Chr XIV from 284261-285889, Verified
ORF, "Karyopherin alpha homolog, forms a dimer with
karyopherin beta Kap95p to mediate import of nuclear
proteins, binds the nuclear localization signal of the
substrate during import; may also play a role in
regulation of protein degradation"
Length = 542
Score = 403 bits (1035), Expect = e-116
Identities = 230/513 (44%), Positives = 313/513 (61%), Gaps = 25/513 (4%)
Query: 6 EARRKEFKK----NCDDTRRKREDLVVQIRKQQRECQLESKRAMVMANIGFEENNTYNLN 61
E RR FK + D+ RR+R+ V++RK +R+ L +R + G + + +
Sbjct: 15 EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74
Query: 62 YAKGNQXXXXXXXXXXXXXXXXXXXLEMLKKIPTLAIGVRSNEYVTQLNSTRELRKLLSI 121
+ Q ++ +++P + + S++ QL++T + R++LS
Sbjct: 75 VSADQQFYS-----------------QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR 117
Query: 122 EKGPPIQEVINSGVVPYIVEFLKYDDKTDLQFEAAWVITNIASGSQEQTKVVIDNNAVPH 181
E PPI VI +GVVP +VEF++ + LQ EAAW +TNIASG+ QTKVV+D +AVP
Sbjct: 118 EHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 177
Query: 182 LVRLLSSEKEDVCEQAVWALGNIAGDSAECREYVLNQNSLPLLLKILRTSHKRTLIRNAA 241
++LL + +V EQA+WALGN+AGDS + R+YVL N++ +L + S+K +LIR A
Sbjct: 178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTAT 236
Query: 242 WTLSNLCRG-KPAPKFEIVSKALPTLAALIYNDDEEILTDACWTLSYLSDGSNENINSVL 300
WTLSNLCRG KP P + +VS+ALPTLA LIY+ D E L DACW +SYLSDG E I +V+
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296
Query: 301 DAGVAERVVELLSHCSFLVQTPALRTVGNIVTGDDLQTDVVVKLGAVQXXXXXXXXXXXX 360
D + +R+VELLSH S LVQTPALR VGNIVTG+DLQT VV+ G +
Sbjct: 297 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 356
Query: 361 XXXEACWALSNITAGNISQIQAVIDNNVIPQLINILMKEDFEVRKEAAWAISNASSGGSE 420
EACW +SNITAGN QIQAVID N+IP L+ +L +++ +KEA WAISNASSGG +
Sbjct: 357 IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 416
Query: 421 LQ--IEYLVECGAIHSLSNLLDVEDANIISVTLEGLENILEMGENKKLRDNLPTNPYVHL 478
I YLV G I L +LL++ D II VTL+ LENIL+MGE K L N
Sbjct: 417 RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADF 476
Query: 479 FEECDSVHKIDALQDRKVDNICNKAWKILYKYF 511
E+ + KI Q + D I KA+KI+ YF
Sbjct: 477 IEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 837
Number of extensions: 62
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 542
Length adjustment: 35
Effective length of query: 510
Effective length of database: 507
Effective search space: 258570
Effective search space used: 258570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.2 bits)
S2: 27 (15.0 bits)