Query= PF08_0096 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) RNA helicase,
putative
(941 letters)
>FBgn0003970 type=protein;
loc=2L:join(15068406..15068429,15068483..15068870,
15072338..15072627,15072687..15073430,
15073489..15073702,15073767..15074038,
15074110..15074163); ID=FBpp0080262; name=vas-PA;
parent=FBgn0003970,FBtr0080701;
dbxref=FlyBase:FBpp0080262,
FlyBase_Annotation_IDs:CG3506-PA,GB_protein:AAF53438.1,
GB_protein:AAF53438;
MD5=4d8f61b2fd2fae122b043b6d6b827996; release=r5.1;
species=Dmel; length=661;
Length = 661
Score = 300 bits (767), Expect = 3e-85
Identities = 182/439 (41%), Positives = 253/439 (57%), Gaps = 44/439 (10%)
Query: 335 GVNFDLYNSIPVEISGFNSENVAAIETFDDPXXXXXXXXXXXIKKVNYDKTTPIQKYSLN 394
G++F YN+IPV+++G S+ I+ F + K Y TPIQK S+
Sbjct: 222 GIHFSKYNNIPVKVTG--SDVPQPIQHFTSADLRDIIIDN--VNKSGYKIPTPIQKCSIP 277
Query: 395 IIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPIC 454
+I + DL+ AQTGSGKTA +LLPI++ +L DP + + P
Sbjct: 278 VISSGRDLMACAQTGSGKTAAFLLPILSKLL-EDPHEL---------------ELGRPQV 321
Query: 455 LILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLND 514
+I++PTRELA+QIF +A+KF FE+ +K ++YGG + + Q + +G +++ATPGRL D
Sbjct: 322 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLD 381
Query: 515 ILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHTSENKVEYKKY 574
+++ I T F+VLDEADRMLDMGFS +R I+ M
Sbjct: 382 FVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP----------------- 424
Query: 575 CNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEENKCX 634
+ QT+MFSATF +EIQ +A E+L Y F+ +G VG +KQ + V + K
Sbjct: 425 -----EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAK-R 478
Query: 635 XXXXXXXXXXXXXTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRG 694
TI+FVETKR AD + FLS ++ IHGD+ Q +RE+AL+ FK G
Sbjct: 479 SKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG 538
Query: 695 IKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVN-EDN 753
+L+AT VA+RGLDI NIKHVIN+D+PS IDDY+HRIGRTGR GN G ATSF + E +
Sbjct: 539 SMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKD 598
Query: 754 KNIFKDLLATLEECNQQIP 772
+ I DL+ LE Q +P
Sbjct: 599 RAIAADLVKILEGSGQTVP 617
Score = 16.9 bits (32), Expect = 4.5
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 171 NNENNMMHD 179
NN NN++ D
Sbjct: 186 NNNNNIVED 194
Lambda K H
0.317 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1070
Number of extensions: 49
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 941
Length of database: 661
Length adjustment: 41
Effective length of query: 900
Effective length of database: 620
Effective search space: 558000
Effective search space used: 558000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.1 bits)
S2: 29 (15.8 bits)