>YHR200W RPN10 SGDID:S000001243, Chr VIII from 499079-499885,
           Verified ORF, "Non-ATPase base subunit of the 19S
           regulatory particle (RP) of the 26S proteasome;
           N-terminus plays a role in maintaining the structural
           integrity of the RP; binds selectively to polyubiquitin
           chains; homolog of the mammalian S5a protein"
          Length = 268

 Score =  124 bits (312), Expect = 3e-33
 Identities = 64/161 (39%), Positives = 102/161 (63%)

Query: 4   IEATIICIDNSDYNRNEDIVPNRFLSQIDCVNVLCCNKTSLHYKNNIGILMMAGDKIKVK 63
           +EAT++ IDNS+Y+RN D    RF +QID V  +   K + + +N +G++  AG   +V 
Sbjct: 3   LEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL 62

Query: 64  VSLTNDIGQLLSCIHDIKLDGTCDIIRSLLIAQLALKHRVDKNLDQKIILFIGSPFHVNE 123
            + T + G++L+ +HD +++G   +  +L IAQL LKHR +K   Q+I+ F+ SP   + 
Sbjct: 63  STFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSR 122

Query: 124 KQLINTGKQLKKNNISVDIISFGNIDKNRDKLMMLFESVNN 164
            +LI   K LKKNN++VDII+FG I++N + L     +VNN
Sbjct: 123 DELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163

Lambda     K      H
   0.314    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 238
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 481
Length of database: 268
Length adjustment: 29
Effective length of query: 452
Effective length of database: 239
Effective search space:   108028
Effective search space used:   108028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.3 bits)
S2: 23 (13.5 bits)