>YDL084W SUB2 SGDID:S000002242, Chr IV from 305237-306577, Verified
           ORF, "Component of the TREX complex required for nuclear
           mRNA export; DEAD-box RNA helicase involved in early and
           late steps of spliceosome assembly; homolog of the human
           splicing factor hUAP56"
          Length = 446

 Score = 89.7 bits (221), Expect = 5e-22
 Identities = 42/122 (34%), Positives = 74/122 (60%)

Query: 700 KEELKYKMKVVYKIINDIKYNQCFLFINNTYEGIQVIKMLKKMNVPSYYTSSKIEHKERI 759
           K E + K + + ++++D+++NQ  +F+ +T    ++ K+L   N P+      ++ +ERI
Sbjct: 287 KLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERI 346

Query: 760 QLFKSLQENKVKIVVCTDVMSRGIDNIVCDLVINFDIPQSKETYVHRSGRCGRFGNKGLC 819
             +K+ ++ + +I V TDV  RGID    +L IN+D+    + Y+HR GR GRFG KGL 
Sbjct: 347 ARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLA 406

Query: 820 VS 821
           +S
Sbjct: 407 IS 408

 Score = 35.8 bits (81), Expect = 9e-06
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 31/133 (23%)

Query: 230 IKSLILYGGTDIFESIKTLFYN--FPHIIISTPGRLKHVLNILNKVKIEINKEDKITNKG 287
           +K+ + YGGT I +  + L      PHI+++TPGRLK ++                    
Sbjct: 160 VKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVR------------------- 200

Query: 288 IYPLSYITIINICLNYFILDEIDALLDEQFDEQLKIIYNYIVNPK-IQILCYSSTFQD-- 344
                YI + ++    F++DE D +L E+ D +  +   +   P+  Q++ +S+T     
Sbjct: 201 ---EKYIDLSHV--KNFVIDECDKVL-EELDMRRDVQEIFRATPRDKQVMMFSATLSQEI 254

Query: 345 -ACINNFIQKVIE 356
                 F+Q  +E
Sbjct: 255 RPICRRFLQNPLE 267

 Score = 19.2 bits (38), Expect = 0.84
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 297 INICLNYFILDEIDALL 313
           IN+ +NY + +E D  L
Sbjct: 375 INLAINYDLTNEADQYL 391

 Score = 17.3 bits (33), Expect = 3.2
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 8/47 (17%)

Query: 38 NTSNYNKKEEKGT--------FEELNVSIEIIRALKRINIYYPSVIQ 76
          N +N    ++KG+        F++  +  E+ RA+      +PS +Q
Sbjct: 43 NNNNTAAGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQ 89

Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1043
Number of extensions: 48
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 1321
Length of database: 446
Length adjustment: 40
Effective length of query: 1281
Effective length of database: 406
Effective search space:   520086
Effective search space used:   520086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)