>YER165W PAB1 SGDID:S000000967, Chr V from 510368-512101, Verified
           ORF, "Poly(A) binding protein, part of the 3'-end
           RNA-processing complex, mediates interactions between
           the 5' cap structure and the 3' mRNA poly(A) tail,
           involved in control of poly(A) tail length, interacts
           with translation factor eIF-4G"
          Length = 577

 Score = 57.0 bits (136), Expect = 8e-13
 Identities = 30/96 (31%), Positives = 51/96 (53%)

Query: 4   KEAHSESEEPVHKNDGSTLYVSNLSSKITTAKLQDIFEKYGNIEKCYVISNPITKESRNF 63
           K+A + SE    +N  ++LYV +L   ++ A L DIF   G++    V  + ITK S  +
Sbjct: 22  KQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGY 81

Query: 64  GFVTFNNSEDAENAMNKANKMEIEGREINVEIAKRN 99
            +V FN+ E    A+ + N   I+GR   +  ++R+
Sbjct: 82  AYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRD 117

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 6/112 (5%)

Query: 12  EPVHKNDGSTLYVSNLSSKITTAKLQDIFEKYGNIEKCYVISNPITKESRNFGFVTFNNS 71
           E + K  G  L+V NL   +   KL++ F  YG I    V+     K S+ FGFV F+  
Sbjct: 314 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTP 372

Query: 72  EDAENAMNKANKMEIEGREINVEIAKRNEPHEPTPGEYKGVQNIVKRNGLRH 123
           E+A  A+ + N+  + G+ + V IA+R +         +  Q I  RN +R+
Sbjct: 373 EEATKAITEKNQQIVAGKPLYVAIAQRKDVRRS-----QLAQQIQARNQMRY 419

 Score = 53.5 bits (127), Expect = 9e-12
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 14/128 (10%)

Query: 1   MSSKEAHSESEEPVHKNDGSTLYVSNLSSKITTAKLQDIFEKYGNIEKCYVISNPITKES 60
           +S KE  S+ EE   K   + LYV N++S+ T  + Q++F K+G I     +S  + K++
Sbjct: 202 LSRKERDSQLEET--KAHYTNLYVKNINSETTDEQFQELFAKFGPI-----VSASLEKDA 254

Query: 61  ----RNFGFVTFNNSEDAENAMNKANKMEIEGREINVEIA-KRNEPHEPTPGEYKG--VQ 113
               + FGFV +   EDA  A+   N  E+ G ++ V  A K+NE       +Y+   ++
Sbjct: 255 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 314

Query: 114 NIVKRNGL 121
            + K  G+
Sbjct: 315 KMAKYQGV 322

 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 8   SESEEPVHKNDGSTLYVSNLSSKITTAKLQDIFEKYGNIEKCYVISNPITKESRNFGFVT 67
           S+ +  + K     +++ NL   I    L D F  +G+I    + ++   K S+ FGFV 
Sbjct: 114 SQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVH 172

Query: 68  FNNSEDAENAMNKANKMEIEGREINV 93
           F     A+ A++  N M + G+EI V
Sbjct: 173 FEEEGAAKEAIDALNGMLLNGQEIYV 198

Lambda     K      H
   0.309    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 254
Number of extensions: 16
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 248
Length of database: 577
Length adjustment: 30
Effective length of query: 218
Effective length of database: 547
Effective search space:   119246
Effective search space used:   119246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.7 bits)
S2: 24 (13.9 bits)