Query= PF10_0043 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) ribosomal
protein L13, putative
(202 letters)
>YNL069C RPL16B SGDID:S000005013, Chr XIV from
495002-494975,494525-493957, reverse complement,
Verified ORF, "N-terminally acetylated protein component
of the large (60S) ribosomal subunit, binds to 5.8 S
rRNA; has similarity to Rpl16Ap, E. coli L13 and rat
L13a ribosomal proteins; transcriptionally regulated by
Rap1p"
Length = 198
Score = 186 bits (473), Expect = 2e-52
Identities = 92/161 (57%), Positives = 116/161 (72%)
Query: 7 VIDCKGHLLGRLASLIAKELLNGQRIVAVRCEDINISGSLYRNKLKYQEFLRLRTNTNPK 66
VID K HLLGRLAS IAK++LNGQ+IV VR E +NISG +RNKLKY +FLR T N
Sbjct: 7 VIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKT 66
Query: 67 KGPLHLREPSKILWRCVRGMLPHKTYKGQLALKKLKVCVGMPYPYDKKKKYVLPSALRAF 126
+GP H R PS+IL++ +RGM+ HKT +G+ AL++LK+ G+P PYDKKK+ V+P ALR
Sbjct: 67 RGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVL 126
Query: 127 RLKKHRRYCRLGTLSSRVGWNYDTLVKKNEVLRKQVSKAYY 167
RLK R+Y LG LS+ VGW Y+ +V K E RK S YY
Sbjct: 127 RLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYY 167
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 135
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 198
Length adjustment: 21
Effective length of query: 181
Effective length of database: 177
Effective search space: 32037
Effective search space used: 32037
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.7 bits)
S2: 19 (11.9 bits)