Query= PF10_0081 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) 26S proteasome
regulatory subunit 4, putative
(455 letters)
>YDL007W RPT2 SGDID:S000002165, Chr IV from 438044-439357, Verified
ORF, "One of six ATPases of the 19S regulatory particle
of the 26S proteasome involved in the degradation of
ubiquitinated substrates; required for normal peptide
hydrolysis by the core 20S particle"
Length = 437
Score = 567 bits (1461), Expect = e-166
Identities = 277/399 (69%), Positives = 347/399 (86%), Gaps = 1/399 (0%)
Query: 58 GTSGHSKLPNVTPNTKCRLKLLKLERIKDYLLLEEEYITNQEQIKSSDDKNYVKLK-IDD 116
G + KLPN+ P+T+C+LKLL++ERIKD+LLLEEE+++N E +K + K + K +++
Sbjct: 39 GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEE 98
Query: 117 LRGSPVSVGTLEELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVG 176
+RG+P+S+GTLEE+ID++H I+ + P+YYV+ILSFVDK+LLEPGCSVLL++KT S+VG
Sbjct: 99 IRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVG 158
Query: 177 ILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKG 236
+L D+ DP+VSVMK++K+P ESY+DIGGLESQIQEIKE+VELPLTHPELYE++GIKPPKG
Sbjct: 159 VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKG 218
Query: 237 VILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEEHAPSI 296
VILYG PGTGKTLLAKAVAN+TSATFLR+VGSELIQKYLGDGP+L R++FKVA E+APSI
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSI 278
Query: 297 VFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPAL 356
VFIDEIDA+GTKRY++ SGGEREIQRTMLELLNQLDGFD RGDVKVIMATN+I++LDPAL
Sbjct: 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPAL 338
Query: 357 IRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTE 416
IRPGRIDRKI NPD TK++I IHTSKM +S DV+LE V +KD+LSGADI+A+CTE
Sbjct: 339 IRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTE 398
Query: 417 AGLLALRERRMKITQADLRKARDKALFQKKGNIPEGLYL 455
AGLLALRERRM++T D ++A+++ + K EGLYL
Sbjct: 399 AGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL 437
Lambda K H
0.317 0.137 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 620
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 437
Length adjustment: 32
Effective length of query: 423
Effective length of database: 405
Effective search space: 171315
Effective search space used: 171315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.3 bits)
S2: 25 (14.2 bits)