Query= PF10_0081 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) 26S proteasome regulatory subunit 4, putative (455 letters)
>YDL007W RPT2 SGDID:S000002165, Chr IV from 438044-439357, Verified
           ORF, "One of six ATPases of the 19S regulatory particle
           of the 26S proteasome involved in the degradation of
           ubiquitinated substrates; required for normal peptide
           hydrolysis by the core 20S particle"
          Length = 437

 Score =  567 bits (1461), Expect = e-166
 Identities = 277/399 (69%), Positives = 347/399 (86%), Gaps = 1/399 (0%)

Query: 58  GTSGHSKLPNVTPNTKCRLKLLKLERIKDYLLLEEEYITNQEQIKSSDDKNYVKLK-IDD 116
           G +   KLPN+ P+T+C+LKLL++ERIKD+LLLEEE+++N E +K  + K   + K +++
Sbjct: 39  GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEE 98

Query: 117 LRGSPVSVGTLEELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVG 176
           +RG+P+S+GTLEE+ID++H I+ +   P+YYV+ILSFVDK+LLEPGCSVLL++KT S+VG
Sbjct: 99  IRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVG 158

Query: 177 ILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKG 236
           +L D+ DP+VSVMK++K+P ESY+DIGGLESQIQEIKE+VELPLTHPELYE++GIKPPKG
Sbjct: 159 VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKG 218

Query: 237 VILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEEHAPSI 296
           VILYG PGTGKTLLAKAVAN+TSATFLR+VGSELIQKYLGDGP+L R++FKVA E+APSI
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSI 278

Query: 297 VFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPAL 356
           VFIDEIDA+GTKRY++ SGGEREIQRTMLELLNQLDGFD RGDVKVIMATN+I++LDPAL
Sbjct: 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPAL 338

Query: 357 IRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTE 416
           IRPGRIDRKI   NPD  TK++I  IHTSKM +S DV+LE  V +KD+LSGADI+A+CTE
Sbjct: 339 IRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTE 398

Query: 417 AGLLALRERRMKITQADLRKARDKALFQKKGNIPEGLYL 455
           AGLLALRERRM++T  D ++A+++ +  K     EGLYL
Sbjct: 399 AGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL 437
Lambda     K      H
   0.317    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 620
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 437
Length adjustment: 32
Effective length of query: 423
Effective length of database: 405
Effective search space:   171315
Effective search space used:   171315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.3 bits)
S2: 25 (14.2 bits)