>YEL037C RAD23 SGDID:S000000763, Chr V from 82603-81407, reverse
           complement, Verified ORF, "Protein with ubiquitin-like N
           terminus, recognizes and binds damaged DNA (with Rad4p)
           during nucleotide excision repair; regulates Rad4p
           levels, subunit of Nuclear Excision Repair Factor 2
           (NEF2); homolog of human HR23A and HR23B proteins"
          Length = 398

 Score = 48.9 bits (115), Expect = 2e-10
 Identities = 19/46 (41%), Positives = 34/46 (73%)

Query: 145 LTGDKLKESIDNICAMGFEKEQVKKAMILAYNNPNRAIDYLTNGFP 190
           + G +  E+I+ I  MG+++E+V++A+  A+NNP+RA++YL  G P
Sbjct: 143 VVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEYLLMGIP 188

 Score = 48.5 bits (114), Expect = 3e-10
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 243 AIRDMALSNPQRLPELLQMIGRTDPSFLEYIRQNQTEFLAAL-QNYGNNINDHEEHSXXX 301
           ++R +   NP+ L  LL+ I    P   E+I  N   F++ L +  G+N+ D  E +   
Sbjct: 264 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 323

Query: 302 XXXXXXXXXIQNDSFLQDVGQQVLSDXXXXXXXXXXXXXXXXXMESIKKLESLGFPKHVA 361
                    +  ++    +GQ                       ++I +L  LGF + + 
Sbjct: 324 VEGEDIE--VTGEAAAAGLGQ-------GEGEGSFQVDYTPEDDQAISRLCELGFERDLV 374

Query: 362 LEAFIACDKNEEMAANYLFENMND 385
           ++ + ACDKNEE AAN LF +  D
Sbjct: 375 IQVYFACDKNEEAAANILFSDHAD 398

 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 5/81 (6%)

Query: 7  TLQNNEEE---INVDPDDSILDLKKKVEVVLADMPSDKQKLIFSGKILKDEDKATDI-LK 62
          T +N ++E   ++++P ++IL+ K K+   ++   S + KLI+SGK+L+D    ++  LK
Sbjct: 5  TFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEES-QIKLIYSGKVLQDSKTVSECGLK 63

Query: 63 DNDTVIVMVTRRIINKNNQKE 83
          D D V+ MV+++   K    E
Sbjct: 64 DGDQVVFMVSQKKSTKTKVTE 84

 Score = 22.3 bits (46), Expect = 0.025
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 152 ESIDNICAMGFEKEQVKKAMILAYNNPNRAIDYL 185
           ++I  +C +GFE++ V +       N   A + L
Sbjct: 359 QAISRLCELGFERDLVIQVYFACDKNEEAAANIL 392

 Score = 21.2 bits (43), Expect = 0.056
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 346 ESIKKLESLGFPKHVALEAFIACDKNEEMAANYL 379
           E+I+++  +G+ +     A  A   N + A  YL
Sbjct: 150 ETIERIMEMGYQREEVERALRAAFNNPDRAVEYL 183

Lambda     K      H
   0.315    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 224
Number of extensions: 10
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 389
Length of database: 398
Length adjustment: 31
Effective length of query: 358
Effective length of database: 367
Effective search space:   131386
Effective search space used:   131386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.8 bits)
S2: 24 (13.9 bits)