>YLR222C UTP13 SGDID:S000004212, Chr XII from 581773-579320, reverse
           complement, Verified ORF, "Nucleolar protein, component
           of the small subunit (SSU) processome containing the U3
           snoRNA that is involved in processing of pre-18S rRNA"
          Length = 817

 Score = 82.0 bits (201), Expect = 2e-19
 Identities = 73/337 (21%), Positives = 140/337 (41%), Gaps = 29/337 (8%)

Query: 617 GHEDIVSCIKLNEKNLLLFSASNDKNIFIWSLRNYYCLYILKDNLYPINAIDVNIKHFPS 676
           GHED+++ +   E  L + +AS D    +W      C + +    Y  ++  V     P+
Sbjct: 386 GHEDLLNSLDATEDGLWIATASKDNTAIVWRYNENSCKFDIYAK-YIGHSAAVTAVGLPN 444

Query: 677 IT-------LVSVCEDSSLRLWKCTIDEEXXXXXXXXXXXXXXEDIFDNKESIQSTLTIY 729
           I        L++   D +++ W                         D +    S  T +
Sbjct: 445 IVSKGYPEFLLTASNDLTIKKW----------------IIPKPTASMDVQIIKVSEYTRH 488

Query: 730 PHKVLINDIAISPNCKLVATCSKDKTVKIFETQNLKLIHILEGHKKSVQNVYFSKNDNIL 789
            H+  IN +++SPN  + AT S DKT KI+  +N +L   L  HK+ + +V F + D +L
Sbjct: 489 AHEKDINALSVSPNDSIFATASYDKTCKIWNLENGELEATLANHKRGLWDVSFCQYDKLL 548

Query: 790 YSNSYE-CVRIWSLNNFECLKSIQSLDFNITRVLILN-DSCMXXXXXXXXXXXXXXXXCE 847
            ++S +  V+IWSL+ F  +K+++     + R   +N    +                 E
Sbjct: 549 ATSSGDKTVKIWSLDTFSVMKTLEGHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGE 608

Query: 848 KLLTTNYHKDKIFCLQSYEDEXXXXXXXXXXXXGELIFFKDISDKIITEHVFEKRKNIFY 907
            L T + H ++++ L +  D             G   F+KD +++ I E   + +  +  
Sbjct: 609 CLKTLDGHNNRLWALSTMND---GDMIVSADADGVFQFWKDCTEQEIEEEQEKAKLQVEQ 665

Query: 908 ENCLENLLKEKKINESLLICLKLDKKFKFKTIVENYL 944
           E  L+N + +     + L+ + LD   +   +++  L
Sbjct: 666 EQSLQNYMSKGDWTNAFLLAMTLDHPMRLFNVLKRAL 702

 Score = 55.8 bits (133), Expect = 1e-11
 Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 54/255 (21%)

Query: 597 DNIIRILRFKNNLISQRLL---IGHEDIVSCIKLNEKNLL-------LFSASNDKNIFIW 646
           DN   + R+  N     +    IGH   V+ + L   N++       L +ASND  I  W
Sbjct: 409 DNTAIVWRYNENSCKFDIYAKYIGHSAAVTAVGL--PNIVSKGYPEFLLTASNDLTIKKW 466

Query: 647 SLRNYYC---LYILKDNLY-------PINAIDVNIKHFPSITLVSVCE-DSSLRLWKCTI 695
            +        + I+K + Y        INA+ V+    P+ ++ +    D + ++W    
Sbjct: 467 IIPKPTASMDVQIIKVSEYTRHAHEKDINALSVS----PNDSIFATASYDKTCKIW---- 518

Query: 696 DEEXXXXXXXXXXXXXXEDIFDNKESIQSTLTIYPHKVLINDIAISPNCKLVATCSKDKT 755
                                 N E+ +   T+  HK  + D++     KL+AT S DKT
Sbjct: 519 ----------------------NLENGELEATLANHKRGLWDVSFCQYDKLLATSSGDKT 556

Query: 756 VKIFETQNLKLIHILEGHKKSVQNVYF-SKNDNILYSNSYECVRIWSLNNFECLKSIQSL 814
           VKI+      ++  LEGH  +VQ   F +K   ++   +   ++IW  ++ ECLK++   
Sbjct: 557 VKIWSLDTFSVMKTLEGHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGECLKTLDGH 616

Query: 815 DFNITRVLILNDSCM 829
           +  +  +  +ND  M
Sbjct: 617 NNRLWALSTMNDGDM 631

 Score = 44.3 bits (103), Expect = 4e-08
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 205 LIVGYNNGLINVYNINTYKLKISYKIHNTRITNLKFYKNF------IISSDVTKNIYIYD 258
           L VG  +G I V +I    +  S+K H   I++LKFY         + S D    + ++D
Sbjct: 117 LAVGGTDGSIIVVDIENGYITHSFKGHGGTISSLKFYGQLNSKIWLLASGDTNGMVKVWD 176

Query: 259 IIKRERIITCEDHMGGIIDLLFLEVPN 285
           ++KR+ + T ++H   +  L  +EVP+
Sbjct: 177 LVKRKCLHTLQEHTSAVRGLDIIEVPD 203

 Score = 37.7 bits (86), Expect = 4e-06
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 597 DNIIRILRFKNNLISQRLLIGHEDIVSCIK----LNEKNLLLFSASNDKNIFIWSLRNYY 652
           D  I ++  +N  I+     GH   +S +K    LN K  LL S   +  + +W L    
Sbjct: 123 DGSIIVVDIENGYITHSFK-GHGGTISSLKFYGQLNSKIWLLASGDTNGMVKVWDLVKRK 181

Query: 653 CLYILKDNLYPINAID---VNIKHFPSITLVSVCEDSSLRLW 691
           CL+ L+++   +  +D   V     PS+ L+S   D  + LW
Sbjct: 182 CLHTLQEHTSAVRGLDIIEVPDNDEPSLNLLSGGRDDIINLW 223

 Score = 28.1 bits (61), Expect = 0.003
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 746 LVATCSKDKTVKIFETQNLKLIHILEGHKKSVQN---VYFSKND----NILYSNSYECVR 798
           L+A+   +  VK+++    K +H L+ H  +V+    +    ND    N+L     + + 
Sbjct: 162 LLASGDTNGMVKVWDLVKRKCLHTLQEHTSAVRGLDIIEVPDNDEPSLNLLSGGRDDIIN 221

Query: 799 IWSLNNFECLKSIQSLDFN 817
           +W  N  +  K +++L  N
Sbjct: 222 LWDFNMKKKCKLLKTLPVN 240

 Score = 24.6 bits (52), Expect = 0.035
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 359 IGFISIGNDKIMNIWDLNI 377
           +  +S G D I+N+WD N+
Sbjct: 209 LNLLSGGRDDIINLWDFNM 227

 Score = 24.6 bits (52), Expect = 0.035
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 11/106 (10%)

Query: 596 GDNIIRILRFKNNLISQRLLIGHEDIVSCIKLNEKNLLLFSASNDKNIFIWSLRNYYCLY 655
           GD  ++I       +  + L GH + V       K   L S   D  I IW   +  CL 
Sbjct: 553 GDKTVKIWSLDTFSV-MKTLEGHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGECLK 611

Query: 656 IL---KDNLYPINAIDVNIKHFPSITLVSVCEDSSLRLWK-CTIDE 697
            L    + L+ ++ ++          +VS   D   + WK CT  E
Sbjct: 612 TLDGHNNRLWALSTMN------DGDMIVSADADGVFQFWKDCTEQE 651

 Score = 22.7 bits (47), Expect = 0.13
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 714 DIFDNKESIQSTLTIYP-HKVLINDIAISPNCKLVATCSKDKTVKIF 759
           D+   + S+   + IY  H+ L+N +  + +   +AT SKD T  ++
Sbjct: 369 DLSGPEASLPLDVEIYEGHEDLLNSLDATEDGLWIATASKDNTAIVW 415

 Score = 18.1 bits (35), Expect = 3.3
 Identities = 7/40 (17%), Positives = 17/40 (42%)

Query: 515 DSSLLIYDIRYFKLLKNYICKLEGIFEILFFNTNSEQLTC 554
           D ++ I+ +  F ++K        +    F N   + ++C
Sbjct: 554 DKTVKIWSLDTFSVMKTLEGHTNAVQRCSFINKQKQLISC 593

 Score = 17.3 bits (33), Expect = 5.6
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 214 INVYNINTYKLKISYKIHN---TRITNLK 239
           IN+ ++     KI +KI N     IT LK
Sbjct: 40  INIIDLTPGSRKILHKISNEDEQEITALK 68

 Score = 16.5 bits (31), Expect = 9.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 148 DIYLYERKEDI 158
           D+ +YE  ED+
Sbjct: 380 DVEIYEGHEDL 390

 Score = 16.5 bits (31), Expect = 9.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)

Query: 367 DKIMNIWDLN 376
           DK + IW L+
Sbjct: 554 DKTVKIWSLD 563

Lambda     K      H
   0.321    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1890
Number of extensions: 100
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 1220
Length of database: 817
Length adjustment: 44
Effective length of query: 1176
Effective length of database: 773
Effective search space:   909048
Effective search space used:   909048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.2 bits)
S2: 31 (16.5 bits)