Query= PF10_0149 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) cysteine -- tRNA ligase, putative (593 letters)
>YNL247W YNL247W SGDID:S000005191, Chr XIV from 182876-185179,
           Uncharacterized ORF, "Protein required for cell
           viability"
          Length = 767

 Score =  338 bits (866), Expect = 6e-97
 Identities = 195/492 (39%), Positives = 287/492 (58%), Gaps = 32/492 (6%)

Query: 107 FTELARKWEYEFWEDMKSLNVLLPTAITRVSEYVGDIVKYIEKIIENKYAYVSEEGSVYF 166
           F +L   WE +F +DM SLNVL PT  TRVSEYV +I+ +++KII+N YAY + +GSVYF
Sbjct: 234 FRQLPAYWEQKFNDDMLSLNVLPPTVTTRVSEYVPEIIDFVQKIIDNGYAYATSDGSVYF 293

Query: 167 DIDEFKKSEKHFYARMEPLSVKDENKILEGEGDLGVISKK-KKNAYDFALWKSSKPNEPH 225
           D  +F KS  H YA+ +P +    + I +GEG L   +   KK+  DFALWK+SK  EP 
Sbjct: 294 DTLKFDKSPNHDYAKCQPWNKGQLDLINDGEGSLSNFADNGKKSNNDFALWKASKAGEPE 353

Query: 226 WDSPWGKGRPGWHIECSTMASNILGDVLDIHSGGIDLRFPHHDNELAQSEAFFDHSQWVN 285
           W+SPWGKGRPGWHIECS MAS+ILG  +DIHSGGIDL FPHHDNELAQSEA FD+ QW+N
Sbjct: 354 WESPWGKGRPGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEARFDNQQWIN 413

Query: 286 YFLHSGHLHIEGLKMSKSLKNFITIKNMLTKYTSNQIRILFLLNKWDNFMNYSPNGESMV 345
           YFLH+GHLHIEG KMSKSLKNFITI+  L K++  Q+R+ F   +W+N +++    ES++
Sbjct: 414 YFLHTGHLHIEGQKMSKSLKNFITIQEALKKFSPRQLRLAFASVQWNNQLDFK---ESLI 470

Query: 346 QCIE-IDKSFTNFFAII-LMKIKNFDLNSCNLYWSDADNKLNLLFRQTKNKIHEHFLDNF 403
             ++  + S  NFF  I  +K         +  +S  + +L   F ++++K+H  F DN 
Sbjct: 471 HEVKSFENSMNNFFKTIRALKNDAASAGHISKKFSPLEKELLADFVESESKVHSAFCDNL 530

Query: 404 NTPDALLAIQKLITEINIYMDK--EKIQIGLLLEIKHYINFIFDTFGLIYGDAPKGKYDK 461
           +TP AL  + +L+T+ N Y+      ++I  L+ I  YI  I    G        G   +
Sbjct: 531 STPVALKTLSELVTKSNTYITTAGAALKIEPLIAICSYITKILRIIGFPSRPDNLGWAAQ 590

Query: 462 FDELLQTLGTYRRNIRINLQSNAKLIRNILKEKNKKNDLDPVAAQEKSELLHSEFINNIK 521
                 +LG+    +   ++  +            ++D+  +A +              K
Sbjct: 591 AGSNDGSLGSLEDTVMPYVKCLSTF----------RDDVRSLAIK--------------K 626

Query: 522 ANNELLLKECDLLRDQHLLNMGILIDDRPNNEFVIKIIDDNQLQQEKNKREQELSKKMAG 581
           A  +  L+  D +R++ LLN+ + +DDR     +IK + +++  +     E++ + ++A 
Sbjct: 627 AEPKEFLQLTDKIRNEDLLNLNVALDDRNGQSALIKFLTNDEKLEIVKLNEEKHANELAK 686

Query: 582 DQKKGNQNEKRE 593
            QKK  Q + RE
Sbjct: 687 KQKKLEQQKLRE 698

 Score =  107 bits (267), Expect = 2e-27
 Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 2/84 (2%)

Query: 8   PKWNQPSKEGKKITNLFVNNSLTHSKVEFIPQEGNK-IKWYACGPTVYDAAHLGHARTYV 66
           PKW  P+ + K+ T L + NSLT SKVEFIPQ GN+ + WY+CGPTVYDA+H+GHAR YV
Sbjct: 22  PKWKVPTPQAKE-TVLKLYNSLTRSKVEFIPQSGNRGVTWYSCGPTVYDASHMGHARNYV 80

Query: 67  SFDIIRRILVNYFKYDVFMVINIT 90
           S DI RRI+ +YF YDV  V N+T
Sbjct: 81  SIDINRRIIQDYFGYDVQFVQNVT 104

 Score = 16.2 bits (30), Expect = 5.5
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 120 EDMKSLNVLLPT---AITRVSEYVGDIVKYIEKIIENKYAYVSEEGSVYFD---IDEFKK 173
           ED+ +LNV L         +     D    I K+ E K+A    +     +   + E K+
Sbjct: 642 EDLLNLNVALDDRNGQSALIKFLTNDEKLEIVKLNEEKHANELAKKQKKLEQQKLREQKE 701

Query: 174 SEKHFYARMEPLSVKDENKILEGEGDLGVISKKK 207
           +E+   A+++P  +  +  +     + G+ +K K
Sbjct: 702 NERKQKAQIKPQDMFKDVTLYSAWDEQGLPTKDK 735

 Score = 15.8 bits (29), Expect = 7.2
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 441 NFIFDTF 447
           N++FD F
Sbjct: 117 NYLFDNF 123
Lambda     K      H
   0.318    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1343
Number of extensions: 66
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 9
Length of query: 593
Length of database: 767
Length adjustment: 39
Effective length of query: 554
Effective length of database: 728
Effective search space:   403312
Effective search space used:   403312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.7 bits)
S2: 28 (15.4 bits)