Query= PF10_0149 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) cysteine --
tRNA ligase, putative
(593 letters)
>YNL247W YNL247W SGDID:S000005191, Chr XIV from 182876-185179,
Uncharacterized ORF, "Protein required for cell
viability"
Length = 767
Score = 338 bits (866), Expect = 6e-97
Identities = 195/492 (39%), Positives = 287/492 (58%), Gaps = 32/492 (6%)
Query: 107 FTELARKWEYEFWEDMKSLNVLLPTAITRVSEYVGDIVKYIEKIIENKYAYVSEEGSVYF 166
F +L WE +F +DM SLNVL PT TRVSEYV +I+ +++KII+N YAY + +GSVYF
Sbjct: 234 FRQLPAYWEQKFNDDMLSLNVLPPTVTTRVSEYVPEIIDFVQKIIDNGYAYATSDGSVYF 293
Query: 167 DIDEFKKSEKHFYARMEPLSVKDENKILEGEGDLGVISKK-KKNAYDFALWKSSKPNEPH 225
D +F KS H YA+ +P + + I +GEG L + KK+ DFALWK+SK EP
Sbjct: 294 DTLKFDKSPNHDYAKCQPWNKGQLDLINDGEGSLSNFADNGKKSNNDFALWKASKAGEPE 353
Query: 226 WDSPWGKGRPGWHIECSTMASNILGDVLDIHSGGIDLRFPHHDNELAQSEAFFDHSQWVN 285
W+SPWGKGRPGWHIECS MAS+ILG +DIHSGGIDL FPHHDNELAQSEA FD+ QW+N
Sbjct: 354 WESPWGKGRPGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEARFDNQQWIN 413
Query: 286 YFLHSGHLHIEGLKMSKSLKNFITIKNMLTKYTSNQIRILFLLNKWDNFMNYSPNGESMV 345
YFLH+GHLHIEG KMSKSLKNFITI+ L K++ Q+R+ F +W+N +++ ES++
Sbjct: 414 YFLHTGHLHIEGQKMSKSLKNFITIQEALKKFSPRQLRLAFASVQWNNQLDFK---ESLI 470
Query: 346 QCIE-IDKSFTNFFAII-LMKIKNFDLNSCNLYWSDADNKLNLLFRQTKNKIHEHFLDNF 403
++ + S NFF I +K + +S + +L F ++++K+H F DN
Sbjct: 471 HEVKSFENSMNNFFKTIRALKNDAASAGHISKKFSPLEKELLADFVESESKVHSAFCDNL 530
Query: 404 NTPDALLAIQKLITEINIYMDK--EKIQIGLLLEIKHYINFIFDTFGLIYGDAPKGKYDK 461
+TP AL + +L+T+ N Y+ ++I L+ I YI I G G +
Sbjct: 531 STPVALKTLSELVTKSNTYITTAGAALKIEPLIAICSYITKILRIIGFPSRPDNLGWAAQ 590
Query: 462 FDELLQTLGTYRRNIRINLQSNAKLIRNILKEKNKKNDLDPVAAQEKSELLHSEFINNIK 521
+LG+ + ++ + ++D+ +A + K
Sbjct: 591 AGSNDGSLGSLEDTVMPYVKCLSTF----------RDDVRSLAIK--------------K 626
Query: 522 ANNELLLKECDLLRDQHLLNMGILIDDRPNNEFVIKIIDDNQLQQEKNKREQELSKKMAG 581
A + L+ D +R++ LLN+ + +DDR +IK + +++ + E++ + ++A
Sbjct: 627 AEPKEFLQLTDKIRNEDLLNLNVALDDRNGQSALIKFLTNDEKLEIVKLNEEKHANELAK 686
Query: 582 DQKKGNQNEKRE 593
QKK Q + RE
Sbjct: 687 KQKKLEQQKLRE 698
Score = 107 bits (267), Expect = 2e-27
Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Query: 8 PKWNQPSKEGKKITNLFVNNSLTHSKVEFIPQEGNK-IKWYACGPTVYDAAHLGHARTYV 66
PKW P+ + K+ T L + NSLT SKVEFIPQ GN+ + WY+CGPTVYDA+H+GHAR YV
Sbjct: 22 PKWKVPTPQAKE-TVLKLYNSLTRSKVEFIPQSGNRGVTWYSCGPTVYDASHMGHARNYV 80
Query: 67 SFDIIRRILVNYFKYDVFMVINIT 90
S DI RRI+ +YF YDV V N+T
Sbjct: 81 SIDINRRIIQDYFGYDVQFVQNVT 104
Score = 16.2 bits (30), Expect = 5.5
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 120 EDMKSLNVLLPT---AITRVSEYVGDIVKYIEKIIENKYAYVSEEGSVYFD---IDEFKK 173
ED+ +LNV L + D I K+ E K+A + + + E K+
Sbjct: 642 EDLLNLNVALDDRNGQSALIKFLTNDEKLEIVKLNEEKHANELAKKQKKLEQQKLREQKE 701
Query: 174 SEKHFYARMEPLSVKDENKILEGEGDLGVISKKK 207
+E+ A+++P + + + + G+ +K K
Sbjct: 702 NERKQKAQIKPQDMFKDVTLYSAWDEQGLPTKDK 735
Score = 15.8 bits (29), Expect = 7.2
Identities = 4/7 (57%), Positives = 6/7 (85%)
Query: 441 NFIFDTF 447
N++FD F
Sbjct: 117 NYLFDNF 123
Lambda K H
0.318 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1343
Number of extensions: 66
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 9
Length of query: 593
Length of database: 767
Length adjustment: 39
Effective length of query: 554
Effective length of database: 728
Effective search space: 403312
Effective search space used: 403312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.7 bits)
S2: 28 (15.4 bits)