Query= PF10_0187 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) ribosomal
protein L30e, putative
(108 letters)
>YGL030W RPL30 SGDID:S000002998, Chr VII from
439096-439098,439329-439643, Verified ORF, "Protein
component of the large (60S) ribosomal subunit, has
similarity to rat L30 ribosomal protein; involved in
pre-rRNA processing in the nucleolus; autoregulates
splicing of its transcript"
Length = 105
Score = 111 bits (278), Expect = 2e-30
Identities = 53/96 (55%), Positives = 73/96 (76%)
Query: 11 DNINAKLQLVMKSGKYQFGRKSCLKALRTGKGKLVIVSSNCPSIQRSVIEYYAMLSKCGV 70
++IN KL LV+KSGKY G KS +K+LR GK KL+I+++N P +++S +EYYAMLSK V
Sbjct: 8 ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKV 67
Query: 71 HDYHGDNNDLGTACGKLFRISCLVITDVGDSDIIKT 106
+ + G NN+LGTA GKLFR+ + I + GDSDI+ T
Sbjct: 68 YYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTT 103
Lambda K H
0.318 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 105
Length adjustment: 12
Effective length of query: 96
Effective length of database: 93
Effective search space: 8928
Effective search space used: 8928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 14 ( 6.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 14 ( 9.3 bits)
S2: 14 (10.0 bits)