Query= PF10_0194 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(322 letters)
>YOL041C NOP12 SGDID:S000005401, Chr XV from 252645-251266, reverse
complement, Verified ORF, "Nucleolar protein, required
for pre-25S rRNA processing; contains an RNA recognition
motif (RRM) and has similarity to Nop13p, Nsr1p, and
putative orthologs in Drosophila and S. pombe"
Length = 459
Score = 72.0 bits (175), Expect = 3e-17
Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 30/201 (14%)
Query: 69 EEEIAERNKRTIFVGNIPIKDVSISKLLK----------ILNIEKS-------------- 104
+E+ E+ +RT+F+GNI ++ K+ K I E+S
Sbjct: 139 KEDELEKAERTVFIGNILSTVITSKKVYKEFKKLFGTNPIAETEESGNEKEEESSKKSDN 198
Query: 105 ---IVETVRFRSLPLEEKYADKKRLGVMRKKFTDVKDNKNALVTLKEEKDVPLLLER-NG 160
+E++RFRS+ +E A +++ +++KF +D NA + K + V + N
Sbjct: 199 NEFAIESIRFRSISFDE--ALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNA 256
Query: 161 TVYEGYVLRVNKFGDSKSFSRKKSICIKNLCKKLNEKDLYEIMKDVDTIKGVRILRDTAT 220
V++ + LRV+ +K+SI + NL + E+ L++ + I+ VRI+RD+ T
Sbjct: 257 VVFQDHHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKT 316
Query: 221 SMSTGTAFILFESRSAVKKAI 241
+M G A++ F+ +V KA+
Sbjct: 317 NMGKGFAYVQFKDLQSVNKAL 337
Score = 25.0 bits (53), Expect = 0.004
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 221 SMSTGTAFILFESRSAVKKAIQQFNGYTINDRQI 254
S T A+I+++++SAV+K N D +
Sbjct: 231 SRDTINAYIVYKNKSAVRKICSNLNAVVFQDHHL 264
Score = 15.0 bits (27), Expect = 3.8
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 102 EKSIVETVRFRSLPLEEKYADKKR 125
++S V RS+ ++ A+K +
Sbjct: 435 QRSATGRVTKRSIAFKKAQAEKSK 458
Lambda K H
0.314 0.132 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 304
Number of extensions: 17
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 459
Length adjustment: 30
Effective length of query: 292
Effective length of database: 429
Effective search space: 125268
Effective search space used: 125268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.8 bits)
S2: 24 (13.9 bits)