>YNL061W NOP2 SGDID:S000005005, Chr XIV from 510541-512397, Verified
           ORF, "Probable RNA m(5)C methyltransferase, essential
           for processing and maturation of 27S pre-rRNA and large
           ribosomal subunit biogenesis; localized to the
           nucleolus; constituent of 66S pre-ribosomal particles"
          Length = 618

 Score = 50.1 bits (118), Expect = 3e-10
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 11/105 (10%)

Query: 496 KLSEFQKNILTHAINIF----KTAKIFIYSTCSFFEEENEQVIQYVLTKYPNIHLLNA-- 549
           ++   QK +L  AI+      K   + +YSTCS   EE+E VI Y L K PN+ L++   
Sbjct: 447 QIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPNVKLVDTGL 506

Query: 550 --GKDKFLFTNGKYVFSNKCV--RTFPLIHSCRGIFISK-MSIGP 589
             GK+ F    GK    +  +  R +P  ++  G F++K   IGP
Sbjct: 507 AIGKEAFTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKIGP 551

 Score = 25.0 bits (53), Expect = 0.010
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 203 LINHYIYKENKIRIIDKTSCLVVQAANIKRGMIIVDVCSSPGSKAIFSRTLLNKKGYLIC 262
           L  HYI +         +S L V A +      I+D+ ++PG K  +   ++   G +  
Sbjct: 323 LAGHYILQA-------ASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFA 375

Query: 263 IEKDRKRCYTLLKEL 277
            + ++ R  +L+  +
Sbjct: 376 NDANKSRTKSLIANI 390

 Score = 21.2 bits (43), Expect = 0.14
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 113 EKLKEGIIKKYFIIYDEKYEDENLYKDNTKCIKN 146
           E L+EGII   F  ++++ +D    K   K +KN
Sbjct: 571 EALEEGIIHSDFATFEDEEDD----KYIEKSVKN 600

 Score = 18.5 bits (36), Expect = 0.90
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 184 EMDEDVEFLYKINNKDVYKLINHYIYKENK 213
           E D+D   L     KD + L   Y Y E++
Sbjct: 92  EEDDDEAGLVDEELKDEFDLEQEYDYDEDE 121

 Score = 15.8 bits (29), Expect = 5.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 112 DEKLKEGIIKKYFIIYDEKYEDE 134
           DE+LK+    +    YDE  +++
Sbjct: 102 DEELKDEFDLEQEYDYDEDEDND 124

 Score = 15.0 bits (27), Expect = 9.9
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 291 NFDDTQKITLNKKSFFHNE 309
           +FDD Q     K++    E
Sbjct: 553 SFDDNQASAKEKETAARKE 571

Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 883
Number of extensions: 52
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 601
Length of database: 618
Length adjustment: 37
Effective length of query: 564
Effective length of database: 581
Effective search space:   327684
Effective search space used:   327684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)