>YGL171W ROK1 SGDID:S000003139, Chr VII from 182396-184090, Verified
           ORF, "ATP-dependent RNA helicase of the DEAD box family;
           required for 18S rRNA synthesis"
          Length = 564

 Score =  148 bits (374), Expect = 6e-40
 Identities = 134/537 (24%), Positives = 223/537 (41%), Gaps = 112/537 (20%)

Query: 128 LNHNMKPYNSDS-DNQNNKEKDMEKNK--IDTLTNEQKEIISN---KEKEKRKNDKSNNK 181
           +N N + +  D+ ++Q  KE D  +NK  I  + +++++   N    ++EK  ND    K
Sbjct: 29  INGNDENHKEDNNESQIVKELDFFRNKRIISKVEDDREKTTENDSPNKEEKSGNDDGLIK 88

Query: 182 TYIINK------------------------EYEKLLSTIK------NTLY---FKKPTCI 208
             I N                          +E L+S         N L    F +PT I
Sbjct: 89  PVITNTVEASALRKSYKGNVSGIDIPLPIGSFEDLISRFSFDKRLLNNLIENGFTEPTPI 148

Query: 209 QKMCIPSILNDYNTICISQTGSGKTCSFLIPLLIKLNNIYLEKHEREXXXXXXXXXXXXX 268
           Q  CIP  LN+ + +    TGSGKT    +  LI L    ++  +               
Sbjct: 149 QCECIPVALNNRDVLACGPTGSGKT----LAFLIPLVQQIIDDKQTAG------------ 192

Query: 269 XXXXXXXXXXXXXXXXXXXXXXXXXXXENLIFIKSLIIVPTNELACQIYEQALLL----- 323
                                           +K LII PT ELA QI+ +   L     
Sbjct: 193 --------------------------------LKGLIISPTKELANQIFIECFKLSYKIF 220

Query: 324 FESYKHINIIHLNKL------NDIIENNVIDVCVCTPMILLNMIHXXXXXXXXXXXXXXX 377
            E  + + +  L+K       N ++ +   D+ + TP+ L++++                
Sbjct: 221 LEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNEALDLSKVKH---- 276

Query: 378 XXXXXCFFIVFDEVDKLFEIKFLEQVNTLLKEIQNRKIQKIFTTATLPGNIKNFISTLCP 437
                   ++FDE DKLF+  F+EQ + +L   +   ++K   +AT+P N++    ++  
Sbjct: 277 --------LIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSNVEEIAQSIMM 328

Query: 438 NYTVVYFGKXXXXXXXXXKQXXXXXXXXXXXXXXXXXXXXXXXXHIPVLIFVDSIIKANM 497
           +   V  G          +Q                          P++IF++SI +A  
Sbjct: 329 DPVRVIIGHKEAANTNI-EQKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLESITRAKA 387

Query: 498 IYTNLHKSVSYIALLTSEKSKEERKIIFQKFQQGHIWYLICTDILSRGIDIKGIETVINY 557
           +Y  L      + ++ +E++  +R  I ++F+ G +W LICTD+L+RGID KG+  VINY
Sbjct: 388 LYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINY 447

Query: 558 DVCYDKYNYMHRIGRACRSDRKEGKAITFFTSENIKYMKEIIKFVKSSGTNIPSYLE 614
           DV      Y+HRIGR  R  R  GKAITF+T ++   +K II  +K SG  +  +++
Sbjct: 448 DVPGSSQAYVHRIGRTGRGGR-SGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMD 503

 Score = 17.3 bits (33), Expect = 2.1
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 145 KEKDMEKNKIDTLTNEQKEIISNKEKEKRKNDK 177
           KEK+  KN       +Q   +   +K KR+  +
Sbjct: 511 KEKESIKNGKAHKERKQITTVPKMDKAKRRRQQ 543

 Score = 15.4 bits (28), Expect = 7.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 14  KSSLKNG 20
           K S+KNG
Sbjct: 513 KESIKNG 519

Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 710
Number of extensions: 41
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 8
Length of query: 680
Length of database: 564
Length adjustment: 37
Effective length of query: 643
Effective length of database: 527
Effective search space:   338861
Effective search space used:   338861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)