Query= PF10_0209 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) RNA helicase,
putative
(680 letters)
>YGL171W ROK1 SGDID:S000003139, Chr VII from 182396-184090, Verified
ORF, "ATP-dependent RNA helicase of the DEAD box family;
required for 18S rRNA synthesis"
Length = 564
Score = 148 bits (374), Expect = 6e-40
Identities = 134/537 (24%), Positives = 223/537 (41%), Gaps = 112/537 (20%)
Query: 128 LNHNMKPYNSDS-DNQNNKEKDMEKNK--IDTLTNEQKEIISN---KEKEKRKNDKSNNK 181
+N N + + D+ ++Q KE D +NK I + +++++ N ++EK ND K
Sbjct: 29 INGNDENHKEDNNESQIVKELDFFRNKRIISKVEDDREKTTENDSPNKEEKSGNDDGLIK 88
Query: 182 TYIINK------------------------EYEKLLSTIK------NTLY---FKKPTCI 208
I N +E L+S N L F +PT I
Sbjct: 89 PVITNTVEASALRKSYKGNVSGIDIPLPIGSFEDLISRFSFDKRLLNNLIENGFTEPTPI 148
Query: 209 QKMCIPSILNDYNTICISQTGSGKTCSFLIPLLIKLNNIYLEKHEREXXXXXXXXXXXXX 268
Q CIP LN+ + + TGSGKT + LI L ++ +
Sbjct: 149 QCECIPVALNNRDVLACGPTGSGKT----LAFLIPLVQQIIDDKQTAG------------ 192
Query: 269 XXXXXXXXXXXXXXXXXXXXXXXXXXXENLIFIKSLIIVPTNELACQIYEQALLL----- 323
+K LII PT ELA QI+ + L
Sbjct: 193 --------------------------------LKGLIISPTKELANQIFIECFKLSYKIF 220
Query: 324 FESYKHINIIHLNKL------NDIIENNVIDVCVCTPMILLNMIHXXXXXXXXXXXXXXX 377
E + + + L+K N ++ + D+ + TP+ L++++
Sbjct: 221 LEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNEALDLSKVKH---- 276
Query: 378 XXXXXCFFIVFDEVDKLFEIKFLEQVNTLLKEIQNRKIQKIFTTATLPGNIKNFISTLCP 437
++FDE DKLF+ F+EQ + +L + ++K +AT+P N++ ++
Sbjct: 277 --------LIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSNVEEIAQSIMM 328
Query: 438 NYTVVYFGKXXXXXXXXXKQXXXXXXXXXXXXXXXXXXXXXXXXHIPVLIFVDSIIKANM 497
+ V G +Q P++IF++SI +A
Sbjct: 329 DPVRVIIGHKEAANTNI-EQKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLESITRAKA 387
Query: 498 IYTNLHKSVSYIALLTSEKSKEERKIIFQKFQQGHIWYLICTDILSRGIDIKGIETVINY 557
+Y L + ++ +E++ +R I ++F+ G +W LICTD+L+RGID KG+ VINY
Sbjct: 388 LYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINY 447
Query: 558 DVCYDKYNYMHRIGRACRSDRKEGKAITFFTSENIKYMKEIIKFVKSSGTNIPSYLE 614
DV Y+HRIGR R R GKAITF+T ++ +K II +K SG + +++
Sbjct: 448 DVPGSSQAYVHRIGRTGRGGR-SGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMD 503
Score = 17.3 bits (33), Expect = 2.1
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 145 KEKDMEKNKIDTLTNEQKEIISNKEKEKRKNDK 177
KEK+ KN +Q + +K KR+ +
Sbjct: 511 KEKESIKNGKAHKERKQITTVPKMDKAKRRRQQ 543
Score = 15.4 bits (28), Expect = 7.9
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 14 KSSLKNG 20
K S+KNG
Sbjct: 513 KESIKNG 519
Lambda K H
0.320 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 710
Number of extensions: 41
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 8
Length of query: 680
Length of database: 564
Length adjustment: 37
Effective length of query: 643
Effective length of database: 527
Effective search space: 338861
Effective search space used: 338861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)